GE213303

Overview
NameGE213303
Unique NameGE213303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213303 vs. ExPASy Swiss-Prot
Match: GP2_SOLLC (Polygalacturonase non-catalytic subunit AroGP2 OS=Solanum lycopersicum GN=GP2 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.647e-43
Identity = 82/113 (72.57%), Postives = 88/113 (77.88%), Query Frame = -1
Query:  238 TTENVNXXXXXXXXXXXXXXXXXXVTKSVSCHQSLFSYLLYYCHSVPKVRVYEADILDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWTTAD 576
            TTEN N                  VTKSVSCHQ+L+  LLYYCHSVPKVRVYEADILD N+KAKINHGVAICH+DTS+W P HGAF+ALGSGPGKIEVCHWIFENDMTW TAD
Sbjct:  517 TTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVYEADILDPNSKAKINHGVAICHVDTSSWGPRHGAFIALGSGPGKIEVCHWIFENDMTWATAD 629          
BLAST of GE213303 vs. ExPASy Swiss-Prot
Match: GP3_SOLLC (Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum GN=GP3 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.151e-43
Identity = 82/113 (72.57%), Postives = 88/113 (77.88%), Query Frame = -1
Query:  238 TTENVNXXXXXXXXXXXXXXXXXXVTKSVSCHQSLFSYLLYYCHSVPKVRVYEADILDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWTTAD 576
            TTEN N                  VTKSVSCHQ+L+  LLYYCHSVPKVRVYEADILD N+KAKINHGVAICH+DTS+W P HGAF+ALGSGPGKIEVCHWIFENDMTW TAD
Sbjct:  520 TTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVYEADILDPNSKAKINHGVAICHVDTSSWGPRHGAFVALGSGPGKIEVCHWIFENDMTWATAD 632          
BLAST of GE213303 vs. ExPASy Swiss-Prot
Match: GP1_SOLLC (Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.394e-42
Identity = 75/88 (85.23%), Postives = 82/88 (93.18%), Query Frame = -1
Query:  238 TKSVSCHQSLFSYLLYYCHSVPKVRVYEADILDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWTTAD 501
            TKSVSCHQ+L+ YLLYYCHSVPKVRVYEADILD N+K KINHGVAICH+DTS+W P+HGAF+ALGSGPGKIEVCHWIFENDMTW  AD
Sbjct:  543 TKSVSCHQTLYPYLLYYCHSVPKVRVYEADILDPNSKVKINHGVAICHVDTSSWGPSHGAFVALGSGPGKIEVCHWIFENDMTWAIAD 630          
BLAST of GE213303 vs. ExPASy Swiss-Prot
Match: JP650_ARATH (Probable polygalacturonase non-catalytic subunit JP650 OS=Arabidopsis thaliana GN=JP650 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 9.992e-41
Identity = 75/113 (66.37%), Postives = 86/113 (76.11%), Query Frame = -1
Query:  238 TTENVNXXXXXXXXXXXXXXXXXXVTKSVSCHQSLFSYLLYYCHSVPKVRVYEADILDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWTTAD 576
            TTENV                   +TK+VSCHQSL+ YLLYYCHSVPKVRVYEAD+L+ N+K KINHG+AICH+DTS+W P+HGAFLALGS PG+IEVCHWIFENDM W  AD
Sbjct:  514 TTENVAGSKEKVVIGKVNGINGGKLTKAVSCHQSLYPYLLYYCHSVPKVRVYEADLLELNSKKKINHGIAICHMDTSSWGPSHGAFLALGSKPGRIEVCHWIFENDMNWAIAD 626          
BLAST of GE213303 vs. ExPASy Swiss-Prot
Match: Y639_ARATH (Probable polygalacturonase non-catalytic subunit At1g60390 OS=Arabidopsis thaliana GN=At1g60390 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.797e-40
Identity = 76/113 (67.26%), Postives = 85/113 (75.22%), Query Frame = -1
Query:  238 TTENVNXXXXXXXXXXXXXXXXXXVTKSVSCHQSLFSYLLYYCHSVPKVRVYEADILDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWTTAD 576
            TTENV                   VT++VSCHQSL+ YLLYYCHSVP+VRVYE D+LD  +  KINHGVAICH+DTSAWSP+HGAFLALGSGPG+IEVCHWIFENDMTW   D
Sbjct:  512 TTENVVGSKKKVVIGKVNGINGGDVTRAVSCHQSLYPYLLYYCHSVPRVRVYETDLLDPKSLEKINHGVAICHIDTSAWSPSHGAFLALGSGPGQIEVCHWIFENDMTWNIID 624          
BLAST of GE213303 vs. ExPASy Swiss-Prot
Match: BURPC_ORYSJ (BURP domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=BURP12 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.105e-39
Identity = 71/88 (80.68%), Postives = 79/88 (89.77%), Query Frame = -1
Query:  238 TKSVSCHQSLFSYLLYYCHSVPKVRVYEADILDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWTTAD 501
            T+SVSCHQSLF YL+YYCHSVPKVRVYEADI+ A++  KINHGVAICHLDTS WSPTHGAF+ALG  PG++EVCHWIFE DMTWT AD
Sbjct:  540 TRSVSCHQSLFPYLVYYCHSVPKVRVYEADIMAADSDQKINHGVAICHLDTSDWSPTHGAFIALGGKPGEVEVCHWIFEGDMTWTVAD 627          
BLAST of GE213303 vs. ExPASy Swiss-Prot
Match: JP630_ARATH (Probable polygalacturonase non-catalytic subunit JP630 OS=Arabidopsis thaliana GN=JP630 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 5.483e-39
Identity = 69/88 (78.41%), Postives = 77/88 (87.50%), Query Frame = -1
Query:  238 TKSVSCHQSLFSYLLYYCHSVPKVRVYEADILDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWTTAD 501
            TKSVSCHQSL+ YLLYYCHSVPKVRVYE+D+LD  +KAKINHG+AICH+DTSAW   HGAF+ LGS PG+IEVCHWIFENDM W  AD
Sbjct:  535 TKSVSCHQSLYPYLLYYCHSVPKVRVYESDLLDPKSKAKINHGIAICHMDTSAWGANHGAFMLLGSRPGQIEVCHWIFENDMNWAIAD 622          
BLAST of GE213303 vs. ExPASy Swiss-Prot
Match: BURPG_ORYSJ (BURP domain-containing protein 16 OS=Oryza sativa subsp. japonica GN=BURP16 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.478e-32
Identity = 59/88 (67.05%), Postives = 69/88 (78.41%), Query Frame = -1
Query:  238 TKSVSCHQSLFSYLLYYCHSVPKVRVYEADILDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWTTAD 501
            T SVSCH+ LF Y++YYCHSVPK+RVYEA+IL   TK KIN GVAICH+DTSAW+  H AF+ALG  PG+ +VCHWIF   MTW  AD
Sbjct:  255 TSSVSCHEYLFPYMVYYCHSVPKIRVYEAEILSVQTKEKINSGVAICHIDTSAWNAGHPAFVALGGKPGQNKVCHWIFNGSMTWVIAD 342          
BLAST of GE213303 vs. ExPASy Swiss-Prot
Match: BURPE_ORYSJ (BURP domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=BURP14 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.655e-27
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = -1
Query:  292 TKSVSCHQSLFSYLLYYCHSVPKVRVYEADILDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGK 501
            T+SVSCHQSLF YL+YYCHSVP VRVYEADIL  ++  KINHGVAICHLDTS WSP HGAF+ALG  PGK
Sbjct:  603 TRSVSCHQSLFPYLVYYCHSVPTVRVYEADILAVDSNQKINHGVAICHLDTSDWSPNHGAFIALGGKPGK 672          
BLAST of GE213303 vs. ExPASy Swiss-Prot
Match: BURP5_ORYSJ (BURP domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=BURP5 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.565e-12
Identity = 29/82 (35.37%), Postives = 46/82 (56.10%), Query Frame = -1
Query:  247 VSCHQSLFSYLLYYCHSVPKVRVYEADILDANTKAKINHGVAICHLDTSAWSPTHGAFLALGSGPGKIEVCHWIFENDMTWT 492
            ++CH   + Y ++ CH     R Y+A ++  +  A     VA+CH DT+ W+P H AF  LG  PG + VCH++  + + WT
Sbjct:  242 IACHPESYPYAVFMCHLTEATRAYKASLVGKDGAAV--EAVAVCHTDTAEWNPKHAAFQVLGVKPGTVPVCHFVQPDVVVWT 321          
The following BLAST results are available for this feature:
BLAST of GE213303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GP2_SOLLC1.647e-4372.57Polygalacturonase non-catalytic subunit AroGP2 OS=... [more]
GP3_SOLLC2.151e-4372.57Polygalacturonase non-catalytic subunit AroGP3 OS=... [more]
GP1_SOLLC1.394e-4285.23Polygalacturonase-1 non-catalytic subunit beta OS=... [more]
JP650_ARATH9.992e-4166.37Probable polygalacturonase non-catalytic subunit J... [more]
Y639_ARATH3.797e-4067.26Probable polygalacturonase non-catalytic subunit A... [more]
BURPC_ORYSJ1.105e-3980.68BURP domain-containing protein 12 OS=Oryza sativa ... [more]
JP630_ARATH5.483e-3978.41Probable polygalacturonase non-catalytic subunit J... [more]
BURPG_ORYSJ8.478e-3267.05BURP domain-containing protein 16 OS=Oryza sativa ... [more]
BURPE_ORYSJ1.655e-2778.57BURP domain-containing protein 14 OS=Oryza sativa ... [more]
BURP5_ORYSJ2.565e-1235.37BURP domain-containing protein 5 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank description157 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.