GE213287

Overview
NameGE213287
Unique NameGE213287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11498 contig Csv1_Contig11498:18..555. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213287 vs. ExPASy Swiss-Prot
Match: UEV1A_ARATH (Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana GN=UEV1A PE=1 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 3.834e-64
Identity = 113/149 (75.84%), Postives = 128/149 (85.91%), Query Frame = 1
Query:   49 PRNFRXXXXXXRGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEGNEDARMDHKGLVLKCCIL 495
            PRNFR      RGEKGIGDGTVSYGMDDADDI MQSWTGTI+GPPNT +EG+I+QLKLFCG +YP++PP+VRFQTRINM CVN ETG+VEPSLFPML NW+REYTMEDIL +LKKEMM+  N KLAQPPEGNE+AR D KG   KCC++
Sbjct:   11 PRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYEGKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPETGVVEPSLFPMLTNWRREYTMEDILVKLKKEMMTSHNRKLAQPPEGNEEARADPKG-PAKCCVM 158          
BLAST of GE213287 vs. ExPASy Swiss-Prot
Match: UEV1B_ARATH (Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana GN=UEV1B PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 8.541e-64
Identity = 111/149 (74.50%), Postives = 129/149 (86.58%), Query Frame = 1
Query:   49 PRNFRXXXXXXRGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEGNEDARMDHKGLVLKCCIL 495
            PRNFR      RGEKGIGDGTVSYGMDDADDILMQSWTGTI+GP NT +EG+I+QLKLFCG DYP++PP+VRFQ+RINM CVN E G+V+PS FPML+NW+RE+TMED+L QLKKEMMS QN KLAQP EGNE+ R D KGLV+KCC++
Sbjct:   11 PRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYEGKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMEDLLIQLKKEMMSSQNRKLAQPLEGNEEGRTDPKGLVVKCCVM 159          
BLAST of GE213287 vs. ExPASy Swiss-Prot
Match: UEV1D_ARATH (Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana GN=UEV1D PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.614e-54
Identity = 98/131 (74.81%), Postives = 107/131 (81.68%), Query Frame = 1
Query:   49 PRNFRXXXXXXRGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 441
            PRNFR      RGEKGIGDGTVSYGMDD DDI M+SWTGTIIGP NTVHEGRIYQLKLFC  DYP+ PP+VRF +R+NM CVN ETG+V+P  F +LANWQREYTMEDIL QLKKEM +  N KL QPPEG
Sbjct:   13 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMEDILVQLKKEMSTSHNRKLVQPPEG 143          
BLAST of GE213287 vs. ExPASy Swiss-Prot
Match: UEV1C_ARATH (Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana GN=UEV1C PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.697e-54
Identity = 98/131 (74.81%), Postives = 108/131 (82.44%), Query Frame = 1
Query:   49 PRNFRXXXXXXRGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 441
            PRNFR      RGEKGIGDGTVSYGMDD DDI M+SWTGTIIGP NTVHEGRIYQLKLFC  DYP+ PP+VRF +RINMTCVN +TG+V+   F +LANWQR+YTMEDILTQLKKEM +  N KL QPPEG
Sbjct:   12 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILTQLKKEMAASHNRKLVQPPEG 142          
BLAST of GE213287 vs. ExPASy Swiss-Prot
Match: UBE2V_DICDI (Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum GN=ube2v PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.118e-38
Identity = 70/131 (53.44%), Postives = 93/131 (70.99%), Query Frame = 1
Query:   49 PRNFRXXXXXXRGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 441
            PRNF        GEK  GDGT+SYG++  DDIL+ SW GTIIGP NT  + R Y LKL+C  DYP+ PP+VRF T+IN+ CVNQ+ G+V+P   P+L+NW  +  +++IL++L++EM S  N KL QPPEG
Sbjct:    5 PRNFVLLEELESGEKSTGDGTISYGLESPDDILLSSWIGTIIGPQNTPFDNRFYSLKLYCDKDYPNKPPTVRFTTKINIGCVNQQNGVVDPKNLPILSNWTSKNRIQNILSELRREMSSSSNKKLVQPPEG 135          
BLAST of GE213287 vs. ExPASy Swiss-Prot
Match: UB2V2_MOUSE (Ubiquitin-conjugating enzyme E2 variant 2 OS=Mus musculus GN=Ube2v2 PE=2 SV=4)

HSP 1 Score: 156.377 bits (394), Expect = 8.050e-38
Identity = 70/131 (53.44%), Postives = 94/131 (71.76%), Query Frame = 1
Query:   49 PRNFRXXXXXXRGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 441
            PRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGPP T +E RIY LK+ CG+ YP+ PPSVRF T+INM  +N  +GMV+    P+LA WQ  Y+++ IL +L++ MMS +N KL QPPEG
Sbjct:   10 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGSKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVILQELRRLMMSKENMKLPQPPEG 140          
BLAST of GE213287 vs. ExPASy Swiss-Prot
Match: UB2V2_RAT (Ubiquitin-conjugating enzyme E2 variant 2 OS=Rattus norvegicus GN=Ube2v2 PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.051e-37
Identity = 69/131 (52.67%), Postives = 94/131 (71.76%), Query Frame = 1
Query:   49 PRNFRXXXXXXRGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 441
            PRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGPP T +E RIY LK+ CG+ YP+ PPSVRF T+INM  +N  +GMV+    P+LA WQ  Y+++ +L +L++ MMS +N KL QPPEG
Sbjct:   10 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGSKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 140          
BLAST of GE213287 vs. ExPASy Swiss-Prot
Match: UB2V2_PONAB (Ubiquitin-conjugating enzyme E2 variant 2 OS=Pongo abelii GN=UBE2V2 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.793e-37
Identity = 69/131 (52.67%), Postives = 93/131 (70.99%), Query Frame = 1
Query:   49 PRNFRXXXXXXRGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 441
            PRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGPP T +E RIY LK+ CG  YP+ PPSVRF T+INM  +N  +GMV+    P+LA WQ  Y+++ +L +L++ MMS +N KL QPPEG
Sbjct:   10 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 140          
BLAST of GE213287 vs. ExPASy Swiss-Prot
Match: UB2V2_HUMAN (Ubiquitin-conjugating enzyme E2 variant 2 OS=Homo sapiens GN=UBE2V2 PE=1 SV=4)

HSP 1 Score: 155.221 bits (391), Expect = 1.793e-37
Identity = 69/131 (52.67%), Postives = 93/131 (70.99%), Query Frame = 1
Query:   49 PRNFRXXXXXXRGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 441
            PRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGPP T +E RIY LK+ CG  YP+ PPSVRF T+INM  +N  +GMV+    P+LA WQ  Y+++ +L +L++ MMS +N KL QPPEG
Sbjct:   10 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 140          
BLAST of GE213287 vs. ExPASy Swiss-Prot
Match: UB2V2_BOVIN (Ubiquitin-conjugating enzyme E2 variant 2 OS=Bos taurus GN=UBE2V2 PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 1.793e-37
Identity = 69/131 (52.67%), Postives = 93/131 (70.99%), Query Frame = 1
Query:   49 PRNFRXXXXXXRGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 441
            PRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGPP T +E RIY LK+ CG  YP+ PPSVRF T+INM  +N  +GMV+    P+LA WQ  Y+++ +L +L++ MMS +N KL QPPEG
Sbjct:   10 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 140          
The following BLAST results are available for this feature:
BLAST of GE213287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
UEV1A_ARATH3.834e-6475.84Ubiquitin-conjugating enzyme E2 variant 1A OS=Arab... [more]
UEV1B_ARATH8.541e-6474.50Ubiquitin-conjugating enzyme E2 variant 1B OS=Arab... [more]
UEV1D_ARATH1.614e-5474.81Ubiquitin-conjugating enzyme E2 variant 1D OS=Arab... [more]
UEV1C_ARATH4.697e-5474.81Ubiquitin-conjugating enzyme E2 variant 1C OS=Arab... [more]
UBE2V_DICDI2.118e-3853.44Probable ubiquitin-conjugating enzyme E2 variant O... [more]
UB2V2_MOUSE8.050e-3853.44Ubiquitin-conjugating enzyme E2 variant 2 OS=Mus m... [more]
UB2V2_RAT1.051e-3752.67Ubiquitin-conjugating enzyme E2 variant 2 OS=Rattu... [more]
UB2V2_PONAB1.793e-3752.67Ubiquitin-conjugating enzyme E2 variant 2 OS=Pongo... [more]
UB2V2_HUMAN1.793e-3752.67Ubiquitin-conjugating enzyme E2 variant 2 OS=Homo ... [more]
UB2V2_BOVIN1.793e-3752.67Ubiquitin-conjugating enzyme E2 variant 2 OS=Bos t... [more]

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Properties
Property NameValue
Genbank description140 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.