GE213280

Overview
NameGE213280
Unique NameGE213280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7274 contig Csv1_Contig7274:1054..1415. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of GE213280 vs. ExPASy Swiss-Prot
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.364e-11
Identity = 43/107 (40.19%), Postives = 53/107 (49.53%), Query Frame = -1 
Query:   21 YKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSGNKKXXXXXXXXXXXXXVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFMLQKY 341
            YKPLHSSVDAKL AIC+++AETQK    K  K S   +KK       +                     + +AGSSP+SDLT  D  EPP        +E F L+KY
Sbjct:  224 YKPLHSSVDAKLEAICKSMAETQK--QDKSTKSSKKREKKVSSPDLSEKVKAEENSVSIGGSPPVTEFEESTAGSSPLSDLTFADPEEPPQ------WNETFSLEKY 322
The following BLAST results are available for this feature:
BLAST of GE213280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RAP24_ARATH3.364e-1140.19Ethylene-responsive transcription factor RAP2-4 OS... [more]
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Properties
Property NameValue
Genbank description132 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.