FC871707

Overview
NameFC871707
Unique NameFC871707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length312
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871707 vs. ExPASy Swiss-Prot
Match: CYB5_ORYSJ (Cytochrome b5 OS=Oryza sativa subsp. japonica GN=Os05g0108800 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.282e-18
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 3
Query:    3 EFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKS 182
            E+YVGDID+ST+          QPHYNQDKTPEFIIK+LQFLVPL ILGLAV IR YTKS
Sbjct:   75 EYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLAILGLAVAIRIYTKS 134          
BLAST of FC871707 vs. ExPASy Swiss-Prot
Match: CYB5_TOBAC (Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.828e-17
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 3
Query:    3 EFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKSA 185
            E+YVGDIDS+T+          QPHYNQDKT EF++KLLQFLVPL+ILG+A GIRFYTK +
Sbjct:   74 EYYVGDIDSATIPTKTKYTPPNQPHYNQDKTSEFVVKLLQFLVPLIILGVAFGIRFYTKQS 134          
BLAST of FC871707 vs. ExPASy Swiss-Prot
Match: CYB5S_TOBAC (Cytochrome b5, seed isoform OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.118e-17
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 3
Query:    3 EFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKSA 185
            E+YVGDIDSST+          QPHYNQDKT EFI+KLLQFLVPL+ILG+A G+ FYTK +
Sbjct:   74 EYYVGDIDSSTIPTKVKYTPPKQPHYNQDKTTEFIVKLLQFLVPLIILGVAFGVHFYTKQS 134          
BLAST of FC871707 vs. ExPASy Swiss-Prot
Match: CYB52_ARATH (Probable cytochrome b5 isoform 2 OS=Arabidopsis thaliana GN=At2g32720 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.547e-16
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 3
Query:    3 EFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKS 182
            ++YVG+ID +T+          QPHYNQDKT EFIIKLLQFLVPL ILGLAVGIR YTKS
Sbjct:   74 QYYVGEIDPTTIPKKVKYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVGIRIYTKS 133          
BLAST of FC871707 vs. ExPASy Swiss-Prot
Match: CYB5_CUSRE (Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.679e-16
Identity = 41/61 (67.21%), Postives = 46/61 (75.41%), Query Frame = 3
Query:    3 EFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKSA 185
            E  VGDIDSST+          QP YNQDKTP+FIIKLLQFLVPL+ILG+AVGIRFY K +
Sbjct:   73 EMCVGDIDSSTIPTKTSYTPPKQPLYNQDKTPQFIIKLLQFLVPLIILGVAVGIRFYKKQS 133          
BLAST of FC871707 vs. ExPASy Swiss-Prot
Match: CYB5_BOROF (Cytochrome b5 OS=Borago officinalis PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.501e-15
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 3
Query:    3 EFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTKSA 185
            E+YVGDIDSS++          QP YN DKT EF+IKLLQFLVPL+IL  A+GIRFYTKS+
Sbjct:   71 EYYVGDIDSSSIPSQVKYTPPKQPLYNPDKTREFVIKLLQFLVPLVILAGAIGIRFYTKSS 131          
BLAST of FC871707 vs. ExPASy Swiss-Prot
Match: CYB5_BRAOB (Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.448e-14
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 3
Query:    3 EFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTK 179
            ++Y+G+IDSSTV          QP YNQDKTPEF+IK+LQFLVP+LILGLA+ +R YTK
Sbjct:   74 KYYIGEIDSSTVPATRTYVAPVQPAYNQDKTPEFMIKILQFLVPILILGLALVVRQYTK 132          
BLAST of FC871707 vs. ExPASy Swiss-Prot
Match: CYB51_ARATH (Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 3
Query:    3 EFYVGDIDSSTVXXXXXXXXXXQPHYNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYTK 179
            ++++G+IDSS+V          QP YNQDKTPEFIIK+LQFLVP+LILGLA+ +R YTK
Sbjct:   74 KYFIGEIDSSSVPATRTYVAPQQPAYNQDKTPEFIIKILQFLVPILILGLALVVRHYTK 132          
The following BLAST results are available for this feature:
BLAST of FC871707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CYB5_ORYSJ6.282e-1871.67Cytochrome b5 OS=Oryza sativa subsp. japonica GN=O... [more]
CYB5_TOBAC1.828e-1765.57Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1[more]
CYB5S_TOBAC3.118e-1765.57Cytochrome b5, seed isoform OS=Nicotiana tabacum P... [more]
CYB52_ARATH1.547e-1668.33Probable cytochrome b5 isoform 2 OS=Arabidopsis th... [more]
CYB5_CUSRE7.679e-1667.21Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1[more]
CYB5_BOROF6.501e-1563.93Cytochrome b5 OS=Borago officinalis PE=2 SV=1[more]
CYB5_BRAOB1.448e-1462.71Cytochrome b5 OS=Brassica oleracea var. botrytis G... [more]
CYB51_ARATH3.226e-1461.02Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAK3BA01FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3BA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871707 ID=FC871707; Name=FC871707; organism=Citrus sinensis; type=EST; length=312bp
ATGAATTCTATGTTGGTGACATTGATTCATCAACCGTTCCCACCAAGACC
AAGTACACCCCTCCCAAGCAGCCTCACTACAACCAAGACAAGACACCCGA
GTTTATTATAAAGCTCCTCCAGTTCCTAGTTCCTCTGCTAATCTTAGGAT
TGGCTGTTGGCATCCGCTTCTATACCAAATCCGCTTAATGATACCTTGCA
AGATAAAAATTGGAGAAACATTTACAATAAATCTATATCCGTTGCATTGC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
back to top