EY680358

Overview
NameEY680358
Unique NameEY680358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680358 vs. ExPASy Swiss-Prot
Match: TRM13_SCHPO (tRNA guanosine-2'-O-methyltransferase trm13 OS=Schizosaccharomyces pombe GN=trm13 PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 8.728e-16
Identity = 49/137 (35.77%), Postives = 69/137 (50.36%), Query Frame = 3
Query:    9 QEKHVTQQASILGNLEEFGVLKNSVGVNQDDEKATPAVVEFGAGRGYLTQMLADGYGTKRVF-LVERKSYKLKADRSLRQKESLT-------IERLRIDIEDLDLSAVES-LRNV--PYLAIGKHLCGPATDLALRC 386
            ++KH  QQAS+LG++E+     N   +            EFGAGR  L++ +      + V+ L++R S + K D  +  K+S+        I R +IDI+DL L    S  RN   P  A  KHLCG ATDL L C
Sbjct:  153 KKKHAIQQASLLGHMEKLHYFDNQGSI----------YYEFGAGRAELSRYVQHCSQQENVYILIDRDSNRTKHDSRIL-KDSIKNNWPEPKIIRCKIDIKDLKLDFFASEFRNSGKPVFAYSKHLCGAATDLTLNC 278          

HSP 2 Score: 42.3578 bits (98), Expect = 8.728e-16
Identity = 26/92 (28.26%), Postives = 49/92 (53.26%), Query Frame = 2
Query:  458 LATCCHHHCQWKHYTN--KKYMLNLGITK-EEFHAISWFTSWAVDADHGLNHLD-FTDSRMHLKSIEKKLGTGLPV-GIEDFVRNIKANERG 718
            +A CCHHHC+W+  +   ++ + + GI+  +EF  +   T WAV++     H     DS +   S E+++  GL    I +++R ++  + G
Sbjct:  289 IALCCHHHCRWRTLSTFAREQLSHWGISNPQEFQILRQMTGWAVNSLREHMHASGGADSHISGLSHEERVKIGLKCKHIINYMRKLECEKMG 380          
BLAST of EY680358 vs. ExPASy Swiss-Prot
Match: TRM13_MOUSE (tRNA guanosine-2'-O-methyltransferase TRM13 homolog OS=Mus musculus GN=Ccdc76 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.991e-15
Identity = 60/136 (44.12%), Postives = 79/136 (58.09%), Query Frame = 3
Query:   15 KHVTQQASILGNLEEFGVLKNSVGVNQDDEKATPAVVEFGAGRGYLTQM----LADGYGTKRVFLVERKSYKLKADRSLRQKESLTIERLRIDIEDLDLSAVESLRN--VPYLAIGKHLCGPATDLALRCCLMEQY 404
            KH+ QQASILGN+E+  +L                 VEFGAG+G L+      L D      + LVER + + K D   R+K+S+  ERL+IDI+ L L+ V  LR   +P + IGKHLCG ATD+ALR CL+E Y
Sbjct:  162 KHLKQQASILGNIEKLKLLG-----------PRRCFVEFGAGKGKLSHWVDIALKDAENVHFI-LVERVTTRFKVDGKHRKKDSV-FERLQIDIQHLCLNRVPVLREGRLPVVGIGKHLCGVATDVALR-CLVETY 283          
BLAST of EY680358 vs. ExPASy Swiss-Prot
Match: TRM13_DICDI (tRNA guanosine-2'-O-methyltransferase TRM13 homolog OS=Dictyostelium discoideum GN=trm13 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 4.177e-15
Identity = 44/128 (34.38%), Postives = 65/128 (50.78%), Query Frame = 3
Query:    9 QEKHVTQQASILGNLEEFGVLKNSVGVNQDDEKATPAVVEFGAGRGYLTQMLADGYGTKRV-FLVERKSYKL--KADRSLRQKESLT-IERLRIDIEDLDLSAVESLRNVPYLAIGKHLCGPATDLAL 380
            Q KH+ Q++SI+  LE      NS   N D+       +EFGAG G L+  +   +  K    L++R  ++   K DR ++ ++      RL IDI  L+LS +  L   P++   KHLCG ATD  L
Sbjct:  247 QLKHIQQESSIINLLE------NSNLYNSDN-----VYLEFGAGSGKLSNHIFMSHEKKSGHILIDRMKFRSLKKVDRLIKNEKGCHHFSRLLIDIRHLNLSNLSILEEKPFVITSKHLCGCATDFTL 363          

HSP 2 Score: 44.669 bits (104), Expect = 4.177e-15
Identity = 21/52 (40.38%), Postives = 31/52 (59.62%), Query Frame = 2
Query:  458 LATCCHHHCQWKHYTNKKYMLN-LGITKEEFHAISWFTSWAVDADHGLNHLD 610
            +ATCCHH C +  Y+N+ Y+ + L IT  EF  I   +SWA   ++  N+ D
Sbjct:  386 IATCCHHICNFNTYSNQSYLKDQLNITPLEFQLICSISSWATIDENKCNNDD 437          
BLAST of EY680358 vs. ExPASy Swiss-Prot
Match: TRM13_HUMAN (tRNA guanosine-2'-O-methyltransferase TRM13 homolog OS=Homo sapiens GN=CCDC76 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.883e-15
Identity = 59/136 (43.38%), Postives = 77/136 (56.62%), Query Frame = 3
Query:   15 KHVTQQASILGNLEEFGVLKNSVGVNQDDEKATPAVVEFGAGRGYLTQM----LADGYGTKRVFLVERKSYKLKADRSLRQKESLTIERLRIDIEDLDLSAVESLRN--VPYLAIGKHLCGPATDLALRCCLMEQY 404
            KH+ QQASILGN+E   +L                 VEFGAG+G L+      L D      + LVE+ + + K D   R+K S+  ERL+IDI+ L L+ +  LR   +P + IGKHLCG ATDLALR CL+E Y
Sbjct:  162 KHLKQQASILGNIENLKLLG-----------PRRCFVEFGAGKGKLSHWVDIALKDAEKVHFI-LVEKVTTRFKVDGKHRKKNSV-FERLQIDIQHLCLNKIPVLREEKLPVVGIGKHLCGMATDLALR-CLVETY 283          
BLAST of EY680358 vs. ExPASy Swiss-Prot
Match: TRM13_YEAST (tRNA guanosine-2'-O-methyltransferase TRM13 OS=Saccharomyces cerevisiae GN=TRM13 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.231e-12
Identity = 47/160 (29.38%), Postives = 74/160 (46.25%), Query Frame = 3
Query:    3 PFQEKHVTQQASILGNLEEFGVLKNSVGVNQDDEKATPAVVEFGAGRG---------YLTQMLA-----DGYGTKRVFLVERKSYKLKADRSLRQKESL-------------TIERLRIDIEDLDLSAVESLRNVP-----YLAIGKHLCGPATDLALRC 386
            P   KH  QQ+S++ NL + G  +    +N          +EFG GR           LTQ+ +      G  +    L++R + ++K D+ ++   S              +I+R++IDI DL +  +  L++ P     Y+ I KHLCG ATDL LRC
Sbjct:  172 PSNTKHAVQQSSLIENLVDAGAFERPESLN---------FIEFGCGRAEFSRYVSLYLLTQLTSLPAEHSGSNSNEFVLIDRATNRMKFDKKIKDDFSEIKSNSPSKPISCPSIKRIKIDIRDLKMDPI--LKSTPGDDIQYVCISKHLCGVATDLTLRC 320          

HSP 2 Score: 28.8758 bits (63), Expect = 2.231e-12
Identity = 9/23 (39.13%), Postives = 14/23 (60.87%), Query Frame = 2
Query:  458 LATCCHHHCQWKHYTNKKYMLNL 526
            +A CC H C +  Y N+ Y+ +L
Sbjct:  344 IAMCCRHVCDYGDYVNRSYVTSL 366          
The following BLAST results are available for this feature:
BLAST of EY680358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TRM13_SCHPO8.728e-1635.77tRNA guanosine-2'-O-methyltransferase trm13 OS=Sch... [more]
TRM13_MOUSE1.991e-1544.12tRNA guanosine-2'-O-methyltransferase TRM13 homolo... [more]
TRM13_DICDI4.177e-1534.38tRNA guanosine-2'-O-methyltransferase TRM13 homolo... [more]
TRM13_HUMAN9.883e-1543.38tRNA guanosine-2'-O-methyltransferase TRM13 homolo... [more]
TRM13_YEAST2.231e-1229.38tRNA guanosine-2'-O-methyltransferase TRM13 OS=Sac... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-010-C02-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680358 ID=EY680358; Name=EY680358; organism=Citrus sinensis; type=EST; length=835bp
TACCATTTCAGGAGAAACATGTTACGCAACAGGCATCAATCCTTGGGAAC
TTGGAAGAATTTGGGGTGTTGAAGAACTCTGTTGGAGTGAATCAGGATGA
TGAGAAGGCTACACCAGCTGTGGTTGAGTTTGGTGCTGGGAGAGGATACT
TGACGCAAATGCTTGCAGATGGTTATGGCACAAAAAGGGTCTTTCTGGTT
GAAAGAAAGTCATACAAGTTGAAGGCTGATCGGTCCTTGAGACAGAAAGA
GAGCTTGACAATAGAGCGGTTGAGAATTGACATTGAGGATTTGGACCTGA
GTGCTGTGGAGTCATTAAGGAATGTTCCTTATCTGGCAATTGGTAAACAT
CTCTGTGGTCCTGCCACAGATTTGGCTCTAAGATGCTGTTTGATGGAACA
ATATACACAAGATAATGTTGAACACTGCAGCAGTAACAATTACGTCAGAG
GTCTTTCTTAGCAACATGTTGCCATCATCATTGCCAGTGGAAACACTATA
CAAATAAAAAATATATGTTGAATCTAGGGATCACAAAGGAAGAATTTCAT
GCAATTTCTTGGTTTACCAGCTGGGCGGTAGATGCTGATCATGGTTTAAA
TCATCTCGATTTTACTGATAGCCGAATGCATTTAAAATCGATTGAGAAAA
AATTAGGTACCGGGCTTCCAGTGGGAATTGAAGACTTCGTGAGGAATATA
AAGGCGAATGAAAGGGGCGTGGTTGGGATTTATGTGCCAGCCAAATCTTT
GATGGGGGTAAATTGGTGGGGGATGAAAGGAACAGGGGTTAAAAACCCAA
GGGGCCTTTAATTTTGTTCCCTTTCACGTTTCCCC
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