EY678188

Overview
NameEY678188
Unique NameEY678188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length992
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY678188 vs. ExPASy Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.663e-54
Identity = 123/207 (59.42%), Postives = 141/207 (68.12%), Query Frame = 3
Query:    3 MAATTQASLFAPANFSTTTSSAPWKQS-SSFSVRPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLAEAG*ERAVLGSGDKAEVQVQN*VPVLPRVSHGEVQNLHPKDGVYPEKSETLKGKELGQNYRSIWKEWESQFKAKFYGKTEYE 620
            MA  TQASLF PA  S   SSAPWKQS +SFS + LK        I+AMAE +  T   EAPVGFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREG NL +   +   L  G +   + +          +GEVQ LHPKDGVYPEK    + + +GQN+RSI K  +S  + KF GK  Y+
Sbjct:    1 MAMATQASLFTPA-LSAPKSSAPWKQSLASFSPKQLKSTVSAPRPIRAMAE-EAATKEAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGR-QGVGQNFRSIGKN-KSPIEVKFTGKQVYD 203          
BLAST of EY678188 vs. ExPASy Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.192e-52
Identity = 121/210 (57.62%), Postives = 140/210 (66.67%), Query Frame = 3
Query:    3 MAATTQASLFAPANFSTTTSSAPWKQSS-SFSV-RPLKHNAPRTNTIKAMAE-GKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLAEAG*ERAVLGSGDKAEVQVQN*VPVLPRVSHGEVQNLHPKDGVYPEKSETLKGKE-LGQNYRSIWKEWESQFKAKFYGKTEYE 620
            MA  TQASLF P      +++APWKQS  SFS  + LK     T  I+AMAE     T  K AP GFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR+GPNL +   +   L  G +   + +          +GEVQ LHPKDGVYPEK     G+E +GQN+RSI K  +S  + KF GK  Y+
Sbjct:    1 MAMATQASLFTPPLSVPKSTTAPWKQSLVSFSTPKQLKSTVSVTRPIRAMAEEAPAATEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVN--PGREGVGQNFRSIGKN-KSAIEVKFTGKQVYD 207          
BLAST of EY678188 vs. ExPASy Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.104e-49
Identity = 116/212 (54.72%), Postives = 138/212 (65.09%), Query Frame = 3
Query:    3 MAATTQASLFAPANFS--TTTSSAPWKQSSSFSV---RPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLAEAG*ERAVLGSGDKAEVQVQN*VPVLPRVSHGEVQNLHPKDGVYPEKSETLKGKE-LGQNYRSIWKEWESQFKAKFYGKTEYE 620
            MA  TQA+LF P+  +  +T  S PWKQSS+ S    +P    A  + + K  AE +T     EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNL +   +   L  G +   + +          +GEVQ LHPKDGVYPEK     G+E +GQN+RSI K   S  + KF GK  Y+
Sbjct:    1 MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV---EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN--PGREGVGQNFRSIGKN-VSPIEVKFTGKQVYD 206          
BLAST of EY678188 vs. ExPASy Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 8.840e-48
Identity = 117/216 (54.17%), Postives = 140/216 (64.81%), Query Frame = 3
Query:    3 MAATTQASLFAPANFST-----TTSSAPWKQSSS--FSVRPL-KHNAPRTNTIKAMAEGKTE--TPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLAEAG*ERAVLGSGDKAEVQVQN*VPVLPRVSHGEVQNLHPKDGVYPEKSETLKGKELGQNYRSIWKEWESQFKAKFYGKTEYE 620
            MA  TQA+LF+P++ S+     T  +  +KQ S+  F+ +P  +H++ R     A AEGK    T TKEAP GFTPPELDPNTPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNL +   +   L  G +   + +           GEVQ LHPKDGVYPEK    + + +G N RSI K   S  + KF GK  Y+
Sbjct:    1 MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFASKPASRHHSIRA---AAAAEGKAAAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVNPGR-QGVGLNMRSIGKN-VSPIEVKFTGKQPYD 211          
BLAST of EY678188 vs. ExPASy Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.667e-46
Identity = 111/206 (53.88%), Postives = 130/206 (63.11%), Query Frame = 3
Query:    9 ATTQASLFAPANFSTTTSSAPWKQSSSFSVRPLKHNAPRTNTIKAMAEGKTETPT-KEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLAEAG*ERAVLGSGDKAEVQVQN*VPVLPRVSHGEVQNLHPKDGVYPEKSETLKGKE-LGQNYRSIWKEWESQFKAKFYGKTEYE 620
            AT  A +F+PA  +TTTS+       S S RP   +  +T       E  +  P  KEAPVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMREGPNL +   +   L  G +   + +          +GEVQ LHPKDGVYPEK+    G+E +G N RSI K   S  + KF GK  Y+
Sbjct:    2 ATQAAGIFSPA-ITTTTSAVKKLHLFSSSHRPKSLSFTKTAIRAEKTESSSAAPAVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKAN--PGREGVGLNMRSIGKN-VSPIEVKFTGKQSYD 203          
BLAST of EY678188 vs. ExPASy Swiss-Prot
Match: PSAD1_ARATH (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.662e-44
Identity = 108/209 (51.67%), Postives = 124/209 (59.33%), Query Frame = 3
Query:    9 ATTQASLFAPANFSTTTSSAPWKQSSSFSVRP----LKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLAEAG*ERAVLGSGDKAEVQVQN*VPVLPRVSHGEVQNLHPKDGVYPEKSETLKGKE-LGQNYRSIWKEWESQFKAKFYGKTEYE 620
            AT  A +F  A  +  TS        S + RP        A R     + A       TKEAPVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMREGPNL +   +   L  G +   + +          +GEVQ LHPKDGVYPEK+    G+E +G N RSI K   S  + KF GK  Y+
Sbjct:    2 ATQAAGIFNSAITTAATSGVKKLHFFSTTHRPKSLSFTKTAIRAEKTDSSAAAAAAPATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKAN--PGREGVGLNMRSIGKN-VSPIEVKFTGKQSYD 207          
BLAST of EY678188 vs. ExPASy Swiss-Prot
Match: PSAD_HORVU (Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 9.467e-42
Identity = 105/213 (49.30%), Postives = 126/213 (59.15%), Query Frame = 3
Query:    3 MAATTQASL----FAPANFSTTTSSAPWKQSSSFSVR---PLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLAEAG*ERAVLGSGDKAEVQVQN*VPVLPRVSHGEVQNLHPKDGVYPEKSETLKGKELGQNYRSIWKEWESQFKAKFYGKTEYE 620
            MA  TQAS        A +S +    P   +   S R   PL   AP T    A        P + AP GF PP+LDP+TPSPIFGGSTGGLLRKAQVEEFYVITW SPKEQ+FEMPTGGAAIMREGPNL +   +   L  G++   + +          +GEVQ LHPKDGVYPEK    + + +GQN+RSI K   S  + KF GK  ++
Sbjct:    1 MAMATQASAATRHLITAAWSPSAKPRPATLAMPSSARGPAPLFAAAPDTPAPAA-------PPAEPAPAGFVPPQLDPSTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIAYQFYRVFPNGEVQYLHPKDGVYPEKVNAGR-QGVGQNFRSIGKN-VSPIEVKFTGKNSFD 204          
BLAST of EY678188 vs. ExPASy Swiss-Prot
Match: PSAD_CHLRE (Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 4.408e-31
Identity = 91/190 (47.89%), Postives = 112/190 (58.95%), Query Frame = 3
Query:   54 TTSSAPWKQSSSFSVRPLKHNAPRTNTIKAMAEGKTETPTKEAPV-GFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLAEAG*ERAVLGSGDKAEVQVQN*VPVLP---RV-SHGEVQNLHPKDGVYPEKSETLKGKELGQNYRSIWKEWESQFKAKFYGK 608
            T + A  + SS  +V   +  A R   ++A AE       K A    +T P L+P+TPSPIFGGSTGGLLRKAQ EEFYVITWE+ KEQIFEMPTGGAAIMR+GPNL + G +   L        Q++N   + P   RV   G+VQ LHP DGVYPEK    +     QN R I +   +  K KF G+
Sbjct:    7 TQAPAATRASSRVAVAA-RPAARRAVVVRAEAEAAPAAAKKAAEKPAWTVPTLNPDTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQCLA----LTTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAGR-VGANQNMRRIGQN-VNPIKVKFSGR 189          
BLAST of EY678188 vs. ExPASy Swiss-Prot
Match: PSAD_CYAPA (Photosystem I reaction center subunit II, cyanelle OS=Cyanophora paradoxa GN=psaD PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.282e-26
Identity = 83/205 (40.49%), Postives = 105/205 (51.22%), Query Frame = 3
Query:   48 STTTSSAPWKQSSSF------SVRPLKHNAPRTNTIKAMAEGKTETPTKE----APVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLAEAG*ERAVLGSG----DKAEVQVQN*VPVLPRVSHGEVQNLHPKDGVYPEKSETLKGKELGQNYRSIWKEWESQFKAKFYGKTEYE 620
            S T SSA   Q  +F      + +     AP    ++A  E        E    AP  F+ P L+ N P+PIFGGSTGGLLRKA+VEEFY ITW    E +FE+PTGGAAIMR G NL     +   +  G    DK ++       V P    GEVQ LHPKDGV+PEK    +   +G N R I +      K KF G+  ++
Sbjct:   16 SATLSSAVCAQKKAFFGAQVAAKKTTFEAAPARFIVRAEEEEAAPAEKVEKKAAAPKPFSVPTLNLNAPTPIFGGSTGGLLRKAEVEEFYSITWTGKSETVFELPTGGAAIMRAGENLLRLARKEQCIALGAQLKDKFKITDYKIYRVYP---SGEVQFLHPKDGVFPEKVNPGR-VAVGSNKRRIGQN-PDPAKLKFKGQETFD 215          
BLAST of EY678188 vs. ExPASy Swiss-Prot
Match: PSAD_ODOSI (Photosystem I reaction center subunit II OS=Odontella sinensis GN=psaD PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.518e-23
Identity = 68/144 (47.22%), Postives = 78/144 (54.17%), Query Frame = 3
Query:  207 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLAEAG*ERAVLGSGDKAEVQVQN*VPVLPRVSHGEVQNLHPKDGVYPEK------SETLKGKELGQNYRSIWKEWESQFKAKFYGKTEYE 620
            L+  TP P FGGSTGG LR A+VEE Y ITW S KEQIFEMPTGGAAIMR G NL     +   L  G +      N   +      GEVQ LHPKDGV+PEK      S   +G  +G+N         +    KF G T YE
Sbjct:    3 LNLQTPFPTFGGSTGGWLRAAEVEEKYAITWTSKKEQIFEMPTGGAAIMRNGENLLYLARKEQCLALGTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGKN--------PNPASIKFSGITTYE 138          
The following BLAST results are available for this feature:
BLAST of EY678188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_NICSY1.663e-5459.42Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SOLLC1.192e-5257.62Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CUCSA2.104e-4954.72Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SPIOL8.840e-4854.17Photosystem I reaction center subunit II, chloropl... [more]
PSAD2_ARATH1.667e-4653.88Photosystem I reaction center subunit II-2, chloro... [more]
PSAD1_ARATH2.662e-4451.67Photosystem I reaction center subunit II-1, chloro... [more]
PSAD_HORVU9.467e-4249.30Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CHLRE4.408e-3147.89Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CYAPA7.282e-2640.49Photosystem I reaction center subunit II, cyanelle... [more]
PSAD_ODOSI1.518e-2347.22Photosystem I reaction center subunit II OS=Odonte... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-045-C12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY678188 ID=EY678188; Name=EY678188; organism=Citrus sinensis; type=EST; length=992bp
CCATGGCCGCAACAACCCAAGCCTCTCTCTTCGCACCGGCCAACTTCTCC
ACCACCACATCCTCTGCGCCGTGGAAGCAATCATCATCATTTTCAGTAAG
GCCACTAAAACATAATGCCCCACGTACCAACACCATCAAGGCCATGGCTG
AGGGAAAAACAGAGACACCCACAAAAGAGGCTCCGGTGGGCTTCACCCCA
CCAGAACTGGACCCCAACACCCCATCTCCGATCTTCGGAGGCAGCACCGG
CGGGCTGCTGCGGAAGGCTCAGGTGGAAGAGTTTTATGTGATCACATGGG
AGTCTCCTAAGGAGCAAATATTTGAAATGCCCACTGGGGGTGCGGCCATT
ATGAGAGAAGGTCCGAATTTGGCTGAAGCTGGCTAGGAAAGAGCAGTGCT
TGGCTCTGGGGACAAAGCTGAGGTCCAAGTACAAAATTAAGTACCAGTTT
TACCAAGGGTTTCCCATGGAGAAGTTCAGAATTTGCATCCCAAGGATGGG
GTTTATCCTGAAAAAAGTGAAACCCTGAAGGGGAAGGAATTGGGCCAAAA
TTACAGGTCCATTTGGAAAGAATGGGAATCCCAATTTAAGGCCAAATTTT
ACGGGAAAACAGAGTATGAATTCTGAAAATTTTAAATTTGAAACCGGCCA
AGCCAAAGGGGCCCCCGAAAGGAAACGGTGAAATTAATGGGGGGGGAAAC
ATTAACATAGGTTCCCAATCGAGGGTTTTCTTTTTTCCCTAAAAAAAATA
TTGGAGAAAAAAAACAAAAAATGTGACCCGCGGAAAAATTTTTTTTTAAT
GAGTACGAAAAATCCCCTTTTTTTTTTGTTTTTATAAATAAAAAAAAAAG
AGAAAAGAAAAAAAAAAAAGAGTGAGAAAAGAATGATTAAAGAGATCAGT
CGACGAGTGACTCTATTCATGCTACAATACCTATAAATATAAGATATAAG
GCTCAAATTACAGTGAAAATTGTGAAATGCGTGGGGGGGGGA
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