EY678177

Overview
NameEY678177
Unique NameEY678177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1139
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY678177 vs. ExPASy Swiss-Prot
Match: GLNA2_DAUCA (Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.389e-39
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 3
Query:   57 LAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPV 368
            +AQILAPS+QWQMR  K S   S MT+KMW SL +KQNKK   RSS K+R LA+KSED T+NR+EDLLNLD+TPYTDKIIAEYIWIGGTGID+RSKS+TISKPV
Sbjct:    1 MAQILAPSVQWQMRFTKNSTEVSSMTSKMWGSLFLKQNKKAPARSSTKYRALAVKSEDGTINRMEDLLNLDVTPYTDKIIAEYIWIGGTGIDVRSKSRTISKPV 104          

HSP 2 Score: 69.3218 bits (168), Expect = 4.695e-11
Identity = 39/80 (48.75%), Postives = 44/80 (55.00%), Query Frame = 1
Query:  325 GLICVASQRPFQSLFEHPSELPKWNYDGSSTGQAPGEDSEIIXXXXXXXXXXXXWKKQPPW*FCDT*PTSQGNPLPTNKR 564
            G+   +  R      EHPSELPKWNYDGSSTGQAPG+DSE+I                     CDT  T QG P+PTNKR
Sbjct:   90 GIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGDDSEVILYPQAIFKDPFRGGNN-ILVICDT-YTPQGEPIPTNKR 167          
BLAST of EY678177 vs. ExPASy Swiss-Prot
Match: GLNA4_PHAVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.004e-37
Identity = 81/104 (77.88%), Postives = 90/104 (86.54%), Query Frame = 3
Query:   57 LAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPV 368
            +AQILAPS QWQMR  K S  ASP+T+  WSSLLMKQNKK    SSAKFRVLA+KS+ ST+NRLE LLNLDITP+TDKIIAEYIWIGGTGID+RSKS+TISKPV
Sbjct:    1 MAQILAPSTQWQMRFTKSSRHASPITSNTWSSLLMKQNKK---TSSAKFRVLAVKSDGSTINRLEGLLNLDITPFTDKIIAEYIWIGGTGIDVRSKSRTISKPV 101          
BLAST of EY678177 vs. ExPASy Swiss-Prot
Match: GLNA2_PEA (Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 8.497e-37
Identity = 102/226 (45.13%), Postives = 137/226 (60.62%), Query Frame = 3
Query:   57 LAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPV*ASI*ASQVEL*WIKYWTGTW*R**NNFITLKPFLRTPSLEETTSLVIL*YLTHQPGEPPPYKQTALGVVEFFENPKVAAKISWVLGKGEKIPLFSQKRGKVAPRVWAGLEPFPGAPRGPFF 734
            +AQILAPS QWQMR+ K S  A+P+T+KMWSSL+MKQ KK  +  SAKFRV+A+ SE+ T+NR+EDLLNLDITP+TD IIAEYIWIGGTGID+RSKS+TISKPV  S  +   +  +    TG      +  I     +         +++++       GEP P  +      E F NPKV A+I W   + E   L +  +    P  W  +  +PG P+GP++
Sbjct:    1 MAQILAPSTQWQMRITKTSPCATPITSKMWSSLVMKQTKKVAH--SAKFRVMAVNSENGTINRVEDLLNLDITPFTDSIIAEYIWIGGTGIDVRSKSRTISKPV--SHPSEVPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVVCDAYTPAGEPIPTNKRH-RAAEIFSNPKVEAEIPWYGIEQEYTLLQTNVKW---PLGWP-VGGYPG-PQGPYY 216          
BLAST of EY678177 vs. ExPASy Swiss-Prot
Match: GLNA2_MEDSA (Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.148e-33
Identity = 107/230 (46.52%), Postives = 136/230 (59.13%), Query Frame = 3
Query:   57 LAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPV*ASI*ASQVEL*WIKY---WTGTW*R**NNFITL-KPFLRTPSLEETTSLVIL*YLTHQPGEPPPYKQTALGVVEFFENPKVAAKISWVLGKGEKIPLFSQKRGKVAPRVWAGLEPFPGAPRGPFF 734
            +AQILAPS+Q Q R+ K S +A+P+++KMWSSL+MKQNKK     SAKFRV+A+ S   T+NR+EDLLNLDITP+TD IIAEYIWIGGTGID+RSKS+TISKPV         EL    Y    TG      +  I   +   + P       LVI    T Q GEP P  +      E F NPKV A+I W   + E   L +  +    P  W  +  +PG P+GP++
Sbjct:    1 MAQILAPSIQCQTRITKTSPLATPISSKMWSSLVMKQNKKVAR--SAKFRVMAINS--GTINRVEDLLNLDITPFTDSIIAEYIWIGGTGIDVRSKSRTISKPV-----EHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPQ-GEPIPTNKRH-KAAEIFSNPKVEAEIPWYGIEQEYTLLQTDVKW---PLGWP-VGGYPG-PQGPYY 214          
BLAST of EY678177 vs. ExPASy Swiss-Prot
Match: GLNA2_ARATH (Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.993e-29
Identity = 91/229 (39.74%), Postives = 131/229 (57.21%), Query Frame = 3
Query:   57 LAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPV*ASI*ASQVEL*WIKY---WTGTW*R**NNFITLKPFLRTPSLEETTSLVIL*YLTHQPGEPPPYKQTALGVVEFFENPKVAAKISWVLGKGEKIPLFSQKRGKVAPRVWAGLEPFPGAPRGPFF 734
            +AQILA S   QMR+PK+S++ +  ++K+WSS+++KQ K+  N+    FRVLAL+S++STVNR+E LLNLD  PY+D+IIAEYIWIGG+GID+RSKS+TI KPV         EL    Y    TG      +  I     +         +++++       GEP P  + A    E F N KV+ ++ W  G  ++  L  Q      P  W  +  FPG P+GP++
Sbjct:    1 MAQILAASPTCQMRVPKHSSVIAS-SSKLWSSVVLKQKKQSNNKVRG-FRVLALQSDNSTVNRVETLLNLDTKPYSDRIIAEYIWIGGSGIDLRSKSRTIEKPV-----EDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRGGNNILVICDTWTPAGEPIPTNKRA-KAAEIFSNKKVSGEVPW-FGIEQEYTLLQQ--NVKWPLGWP-VGAFPG-PQGPYY 216          
BLAST of EY678177 vs. ExPASy Swiss-Prot
Match: GLNAC_BRANA (Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 5.167e-26
Identity = 59/104 (56.73%), Postives = 86/104 (82.69%), Query Frame = 3
Query:   57 LAQILAPSMQWQMRMPKYSNIASPMTTKMWSSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPV 368
            +AQILA S   QMR+ K S+IAS   +K+W+S+++KQ K+ +++  + F+V+AL+S++ST+NR+E LLNLD  P+TD+IIAEYIWIGG+GID+RSKS+T+ KPV
Sbjct:    1 MAQILAASPTCQMRLTKPSSIAS---SKLWNSVVLKQKKQSSSKVRS-FKVMALQSDNSTINRVESLLNLDTKPFTDRIIAEYIWIGGSGIDLRSKSRTLEKPV 100          
BLAST of EY678177 vs. ExPASy Swiss-Prot
Match: GLNA1_MAIZE (Glutamine synthetase root isozyme 1 OS=Zea mays GN=GLN6 PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.284e-21
Identity = 27/41 (65.85%), Postives = 36/41 (87.80%), Query Frame = 3
Query:  246 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPV 368
            L DL+NLD++  TD+IIAEYIWIGGTGID+RSK++T+  P+
Sbjct:    4 LTDLVNLDLSDCTDRIIAEYIWIGGTGIDLRSKARTVKGPI 44          

HSP 2 Score: 60.8474 bits (146), Expect = 1.284e-21
Identity = 34/63 (53.97%), Postives = 37/63 (58.73%), Query Frame = 1
Query:  376 PSELPKWNYDGSSTGQAPGEDSEIIXXXXXXXXXXXXWKKQPPW*FCDT*PTSQGNPLPTNKR 564
            P +LPKWNYDGSSTGQAPGEDSE+I             K       CD   T QG P+PTNKR
Sbjct:   47 PIQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR-KGNHILVMCDC-YTPQGEPIPTNKR 107          
BLAST of EY678177 vs. ExPASy Swiss-Prot
Match: GLNA5_MAIZE (Glutamine synthetase root isozyme 5 OS=Zea mays GN=GS1-5 PE=2 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 1.284e-21
Identity = 26/41 (63.41%), Postives = 36/41 (87.80%), Query Frame = 3
Query:  246 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPV 368
            L DL+NLD++  TDKIIAEYIW+GG+GID+RSK++T+  P+
Sbjct:    4 LTDLVNLDLSDCTDKIIAEYIWVGGSGIDLRSKARTVKGPI 44          

HSP 2 Score: 61.6178 bits (148), Expect = 1.284e-21
Identity = 34/63 (53.97%), Postives = 38/63 (60.32%), Query Frame = 1
Query:  376 PSELPKWNYDGSSTGQAPGEDSEIIXXXXXXXXXXXXWKKQPPW*FCDT*PTSQGNPLPTNKR 564
            PS+LPKWNYDGSSTGQAPGEDSE+I             K       CD   T QG P+P+NKR
Sbjct:   47 PSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR-KGNNILVMCDC-YTPQGEPIPSNKR 107          
BLAST of EY678177 vs. ExPASy Swiss-Prot
Match: GLNA3_LUPAN (Glutamine synthetase nodule isozyme (Fragment) OS=Lupinus angustifolius PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 8.121e-21
Identity = 25/41 (60.98%), Postives = 37/41 (90.24%), Query Frame = 3
Query:  246 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPV 368
            L DL+NL+++  T+KIIAEYIW+GG+G+D+RSK++T+S PV
Sbjct:    4 LSDLINLNLSDTTEKIIAEYIWVGGSGVDLRSKARTLSGPV 44          

HSP 2 Score: 60.4622 bits (145), Expect = 8.121e-21
Identity = 33/63 (52.38%), Postives = 38/63 (60.32%), Query Frame = 1
Query:  376 PSELPKWNYDGSSTGQAPGEDSEIIXXXXXXXXXXXXWKKQPPW*FCDT*PTSQGNPLPTNKR 564
            PS+LPKWNYDGSSTGQAPG+DSE+I             +       CDT  T  G P+PTNKR
Sbjct:   47 PSKLPKWNYDGSSTGQAPGKDSEVILWPQAIFKDPFR-RGNNILVICDT-YTPSGKPIPTNKR 107          
BLAST of EY678177 vs. ExPASy Swiss-Prot
Match: GLN14_ARATH (Glutamine synthetase cytosolic isozyme 1-4 OS=Arabidopsis thaliana GN=GLN1-4 PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 1.053e-20
Identity = 27/44 (61.36%), Postives = 38/44 (86.36%), Query Frame = 3
Query:  237 VNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMRSKSKTISKPV 368
            ++ L DL+NLD++  TD+IIAEYIWIGG+G+DMRSK++T+  PV
Sbjct:    1 MSSLADLINLDLSDSTDQIIAEYIWIGGSGLDMRSKARTLPGPV 44          

HSP 2 Score: 58.9214 bits (141), Expect = 1.053e-20
Identity = 32/63 (50.79%), Postives = 37/63 (58.73%), Query Frame = 1
Query:  376 PSELPKWNYDGSSTGQAPGEDSEIIXXXXXXXXXXXXWKKQPPW*FCDT*PTSQGNPLPTNKR 564
            PS+LPKWNYDGSSTGQAPG+DSE+I             +       CD   T  G P+PTNKR
Sbjct:   47 PSQLPKWNYDGSSTGQAPGDDSEVIIYPQAIFKDPFR-RGNNILVMCDA-YTPAGEPIPTNKR 107          
The following BLAST results are available for this feature:
BLAST of EY678177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
GLNA2_DAUCA2.389e-3975.00Glutamine synthetase, chloroplastic OS=Daucus caro... [more]
GLNA4_PHAVU1.004e-3777.88Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_PEA8.497e-3745.13Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_MEDSA1.148e-3346.52Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_ARATH4.993e-2939.74Glutamine synthetase, chloroplastic/mitochondrial ... [more]
GLNAC_BRANA5.167e-2656.73Glutamine synthetase, chloroplastic OS=Brassica na... [more]
GLNA1_MAIZE1.284e-2165.85Glutamine synthetase root isozyme 1 OS=Zea mays GN... [more]
GLNA5_MAIZE1.284e-2163.41Glutamine synthetase root isozyme 5 OS=Zea mays GN... [more]
GLNA3_LUPAN8.121e-2160.98Glutamine synthetase nodule isozyme (Fragment) OS=... [more]
GLN14_ARATH1.053e-2061.36Glutamine synthetase cytosolic isozyme 1-4 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-045-B12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY678177 ID=EY678177; Name=EY678177; organism=Citrus sinensis; type=EST; length=1139bp
CAGATCAGCATTTTCCCTTTACTCTTCAACCAATTTTCAGGGAGGAGTAG
GTGAACCTGGCGCAGATTTTGGCACCTTCTATGCAATGGCAGATGAGGAT
GCCTAAGTACTCAAACATTGCAAGTCCTATGACAACAAAGATGTGGAGTT
CTCTGTTGATGAAGCAGAACAAGAAAGGAACAAATAGGAGTTCTGCCAAG
TTTAGAGTGCTTGCTTTGAAATCTGAAGACAGCACTGTCAATAGGCTAGA
GGATCTACTCAATTTGGACATCACTCCATATACTGACAAAATCATTGCCG
AATATATTTGGATTGGAGGTACTGGGATTGATATGCGTAGCAAGTCAAAG
ACCATTTCAAAGCCTGTTTGAGCATCCATCTGAGCTTCCCAAGTGGAATT
ATGATGGATCAAGTACTGGACAGGCACCTGGTGAAGATAGTGAAATAATT
TTATAACCCTCAAGCCTTTTTTAAGGACCCCTTCCCTGGAAGAAACAACC
TCCTTGGTAATTTTGTGATACCTAACCCACCAGCCAGGGGAACCCCCTCC
CTACAAACAAACGGCCTTAGGGGTGGTGGAATTTTTCGAAAACCCAAAAG
TGGCGGCTAAAATTTCCTGGGTTTTGGGGAAAGGGGAAAAAATACCCCTT
TTTTCCCAAAAAAGGGGTAAAGTGGCCCCTCGGGTGTGGGCCGGGTTGGA
ACCCTTTCCCGGGGCCCCCCGGGGCCCCTTTTTTATTGGGGGGGAAGGGG
GGGGGGAAAAGAATCTTTTTGGGCCCGAGAAATTTGGAAAAAAACGCCAT
ATAAAAAGGGGCTTGGTTTTTGATGGGCGGGGGATTTTATAAATATTGTG
GGGGCACCAAAACGGGGGGGGGGTGTTTCTGCCGCGCGGGCCTGGTGGGG
GGAAAAAAAATCCAAGTAGTGTGTGAGCCCCCCCGGGTGGGGGAGGGCTG
CAGTTGTGATGGAACGGGGGAGAAGGCATACAATAAAATGATGGGTGGGT
GGTGTGGACGGCGAAATAAAAAACCACCTTCTTATCCTCTCTGATTGAGA
GGATGTAAAAANAAAAAGACATGAACTGTCCTCCATAATCGGCGGAAAGA
CAGAGCGAAAAAAACCAAGCCCAATGGGCGCTGCTGGCG
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