EY680446

Overview
NameEY680446
Unique NameEY680446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length550
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680446 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 5.763e-71
Identity = 135/167 (80.84%), Postives = 144/167 (86.23%), Query Frame = 3
Query:    3 YAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRLCAEAIH*RVKEWEPGIIE*RGTWGNFLEKVGKKLYWPNFK 503
            YAIAFQER++IPDEKM YYE+LAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLS RVALVGDAAGYVTKCSGEGIYFAAKSGR+CAEAI    +  +  I E  G    +LEK   K Y P ++
Sbjct:  229 YAIAFQERIRIPDEKMTYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSKRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSQNGKKMIDE--GDLRKYLEK-WDKTYLPTYR 392          
BLAST of EY680446 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 2.960e-67
Identity = 131/169 (77.51%), Postives = 140/169 (82.84%), Query Frame = 3
Query:    3 YAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRLCAEAIH*RVKEWEPG--IIE*RGTWGNFLEKVGKKLYWPNFK 503
            YAIAFQER+KI D+KM YYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHK DIKKFQLATR RA  KI GGKIIRVEAHPIPEHPRPRRL  RVALVGDAAGYVTKCSGEGIYFAAKSGR+CAEAI   V+  E G  +++       +LEK   K YWP +K
Sbjct:  226 YAIAFQERIKISDDKMKYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKADIKKFQLATRLRADSKITGGKIIRVEAHPIPEHPRPRRLQDRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI---VEGSEMGKRMVD-ESDLRKYLEK-WDKTYWPTYK 389          
BLAST of EY680446 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 1.624e-65
Identity = 118/132 (89.39%), Postives = 124/132 (93.94%), Query Frame = 3
Query:    3 YAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRLCAEAI 398
            YAIAFQERVKIPD+KM YYE  AEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHK DIKKFQ ATR RAKD+I GGKIIRVEAHPIPEHPRP+R++GRV LVGDAAGYVTKCSGEGIYFAAKSGR+CAEAI
Sbjct:  225 YAIAFQERVKIPDDKMKYYEERAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKPDIKKFQAATRLRAKDRIEGGKIIRVEAHPIPEHPRPKRVAGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI 356          
BLAST of EY680446 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 7.825e-52
Identity = 98/133 (73.68%), Postives = 111/133 (83.46%), Query Frame = 3
Query:    3 YAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTV-THKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRLCAEAI 398
            YAIAFQER+++P++KM YY+ LAEMYVGDDVSPDFY WVFPK DHVAVGTGT+  +K  IK  Q   R RA  K+ GG+II+VEAHPIPEHPRPRR+ GRVALVGDAAG VTK SGEGIYFAAKS R+CAE I
Sbjct:  175 YAIAFQERIRLPEDKMAYYDELAEMYVGDDVSPDFYAWVFPKYDHVAVGTGTMKVNKARIKDLQAGIRTRAAKKLEGGEIIKVEAHPIPEHPRPRRVVGRVALVGDAAGTVTKSSGEGIYFAAKSARMCAETI 307          
BLAST of EY680446 vs. ExPASy Swiss-Prot
Match: BCHP_RHOCA (Geranylgeranyl diphosphate reductase OS=Rhodobacter capsulatus GN=bchP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.650e-15
Identity = 60/178 (33.71%), Postives = 81/178 (45.51%), Query Frame = 3
Query:   12 AFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGR-VALVGDAAGYVTKCSGEGIYFAAKSGRLCAEAIH*RVKEWEP--------GIIE*RGTWGNFLEKVGKKLYWPNFKGDREV 518
            A+ E +K P     Y     ++Y    +SPDFYGWVFP     ++G G  T   D+      T  R    +   + IR E  PIP  P     +G+ V L GDAAG V   SGEGIY+A   GR  AEA    +K  +P        G ++  GT    L  +  K Y  + + +R V
Sbjct:  167 AYHEIIKAPTTVANYDPTRCDVYYDGRISPDFYGWVFPHGKTASIGMG--TELPDVSLKDCTTLLRQMSGLDKEETIRKEGAPIPLQPLDVWDNGKDVVLSGDAAGVVAPSSGEGIYYAHAGGRYAAEAAMAFLKSGKPADLKLARAGFMKEHGTVFKVLRMMQDKYYHSDDRRERFV 342          
The following BLAST results are available for this feature:
BLAST of EY680446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CHLP_ARATH5.763e-7180.84Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_TOBAC2.960e-6777.51Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ORYSJ1.624e-6589.39Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_SYNY37.825e-5273.68Geranylgeranyl diphosphate reductase OS=Synechocys... [more]
BCHP_RHOCA7.650e-1533.71Geranylgeranyl diphosphate reductase OS=Rhodobacte... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-011-B09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680446 ID=EY680446; Name=EY680446; organism=Citrus sinensis; type=EST; length=550bp
ATTACGCCATTGCATTTCAGGAAAGAGTCAAAATCCCTGACGAGAAAATG
GTGTACTATGAGAACTTGGCGGAGATGTACGTTGGTGATGATGTGTCGCC
GGACTTTTATGGGTGGGTGTTCCCCAAGTGTGATCATGTGGCAGTTGGTA
CAGGCACAGTGACACACAAAGGTGATATCAAGAAGTTCCAACTTGCAACT
AGAAACCGGGCCAAGGACAAAATCCTTGGTGGCAAGATCATTCGAGTGGA
GGCACACCCGATTCCTGAACACCCCCGCCCGCGGAGGCTATCGGGGAGAG
TGGCATTAGTCGGAGATGCAGCCGGGTACGTCACGAAATGCTCTGGCGAA
GGCATTTACTTTGCGGCAAAGAGTGGAAGATTGTGTGCGGAGGCCATCCA
TTGAAGGGTCAAAGAATGGGAACCAGGAATAATCGAATGAAGGGGGACTT
GGGGAAATTTTTTGGAAAAAGTGGGAAAAAAACTTTACTGGCCCAATTTT
AAAGGGGACCGGGAGGTTTTGGCAAAAAGGGGTTTTTTCCCGATTCGAAT
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