EY678083

Overview
NameEY678083
Unique NameEY678083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1052
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY678083 vs. ExPASy Swiss-Prot
Match: NRAM6_ARATH (Metal transporter Nramp6 OS=Arabidopsis thaliana GN=NRAMP6 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 1.258e-31
Identity = 86/187 (45.99%), Postives = 116/187 (62.03%), Query Frame = 3
Query:  177 KKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLGKNCLS*LLISQK*LGQPLH*IYLFNIPVWGGSSSERWPALSLLLGPAKKWGGRNLERLKNSGLEFKKGWLVFLGKIDY*KPPWPLKGLKGEFFVPQ 737
            +K  W+ F S++GPGFLVS+AY+DPGN ETDLQ+GA ++YELLW++L+    AL+IQSLAANLGV TGKHL+E C+AEY  +  + LW++ +  +    I +  +G       LFNIPVW G        L LL    +++G R LE L  + L F    L F  ++ Y KP  P + L G  FVPQ
Sbjct:   31 EKKSWKNFFSYLGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALVIQSLAANLGVVTGKHLAEHCRAEYSKVPNFMLWVVAEIAVVACDIPEV-IGTAFALNMLFNIPVWIGVLLTGLSTLILL--ALQQYGIRKLEFL-IAFLVFTIA-LCFFVELHYSKPD-PKEVLYG-LFVPQ 210          
BLAST of EY678083 vs. ExPASy Swiss-Prot
Match: NRAM1_ARATH (Metal transporter Nramp1 OS=Arabidopsis thaliana GN=NRAMP1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.643e-31
Identity = 85/187 (45.45%), Postives = 117/187 (62.57%), Query Frame = 3
Query:  177 KKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLGKNCLS*LLISQK*LGQPLH*IYLFNIPVWGGSSSERWPALSLLLGPAKKWGGRNLERLKNSGLEFKKGWLVFLGKIDY*KPPWPLKGLKGEFFVPQ 737
            +K  W+ F +++GPGFLVS+AY+DPGN ETDLQAGA+++YELLW++L+    AL+IQSLAANLGV TGKHL+E C+AEY  +  + LW++ +  +    I +  +G       LF+IPVW G        L LL    +K+G R LE L  + L F    + F  ++ Y KP  P + L G  FVPQ
Sbjct:   39 EKKSWKNFFAYLGPGFLVSIAYIDPGNFETDLQAGAHYKYELLWIILVASCAALVIQSLAANLGVVTGKHLAEQCRAEYSKVPNFMLWVVAEIAVVACDIPEV-IGTAFALNMLFSIPVWIGVLLTGLSTLILL--ALQKYGVRKLEFL-IAFLVFTIA-ICFFVELHYSKPD-PGEVLHG-LFVPQ 218          
BLAST of EY678083 vs. ExPASy Swiss-Prot
Match: NRAM4_ARATH (Metal transporter Nramp4 OS=Arabidopsis thaliana GN=NRAMP4 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.541e-24
Identity = 59/140 (42.14%), Postives = 87/140 (62.14%), Query Frame = 3
Query:  129 INTSKDFGHHPDDPNYKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLGKNCLS*LLISQK*LGQPLH*IYLFN--IPVWGG 542
            I+  +D  +  D  N  K  W++   F GPGFL+S+A+LDPGNLE+DLQAGA   Y L+W+++      L+IQ L+A LGV+TG+HL+ELC+ EYP   +  LW++ +  L    I Q+ +G  +    L N  +P+W G
Sbjct:   29 IDEEEDADYDDDPGNSPKFSWKKLWLFTGPGFLMSIAFLDPGNLESDLQAGAIAGYSLIWLLMWATAIGLLIQLLSARLGVATGRHLAELCREEYPTWARMVLWIMAEIALIGADI-QEVIGSAIAIKILSNGLVPLWAG 167          
BLAST of EY678083 vs. ExPASy Swiss-Prot
Match: NRAM2_RAT (Natural resistance-associated macrophage protein 2 OS=Rattus norvegicus GN=Slc11a2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.673e-24
Identity = 47/94 (50.00%), Postives = 68/94 (72.34%), Query Frame = 3
Query:  165 DPNYKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLL 446
            +  Y    +R+  +F GPGFL+S+AYLDPGN+E+DLQ+GA   ++LLWV+L+  I  L++Q LAA LGV TG HL+E+C  +YP + +  LWL+
Sbjct:   59 EEEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWVLLLATIVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRIILWLM 152          

HSP 2 Score: 26.5646 bits (57), Expect = 6.673e-24
Identity = 11/29 (37.93%), Postives = 21/29 (72.41%), Query Frame = 2
Query:  437 VVAWQ--KLLVIAADIPKVIGTAFALNIL 517
            ++ W   +L +I +D+ +VIG+A A+N+L
Sbjct:  147 IILWLMVELAIIGSDMQEVIGSAIAINLL 175          
BLAST of EY678083 vs. ExPASy Swiss-Prot
Match: NRAM2_MOUSE (Natural resistance-associated macrophage protein 2 OS=Mus musculus GN=Slc11a2 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.673e-24
Identity = 47/94 (50.00%), Postives = 68/94 (72.34%), Query Frame = 3
Query:  165 DPNYKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLL 446
            +  Y    +R+  +F GPGFL+S+AYLDPGN+E+DLQ+GA   ++LLWV+L+  I  L++Q LAA LGV TG HL+E+C  +YP + +  LWL+
Sbjct:   59 EEEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWVLLLATIVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRIILWLM 152          

HSP 2 Score: 26.5646 bits (57), Expect = 6.673e-24
Identity = 11/29 (37.93%), Postives = 21/29 (72.41%), Query Frame = 2
Query:  437 VVAWQ--KLLVIAADIPKVIGTAFALNIL 517
            ++ W   +L +I +D+ +VIG+A A+N+L
Sbjct:  147 IILWLMVELAIIGSDMQEVIGSAIAINLL 175          
BLAST of EY678083 vs. ExPASy Swiss-Prot
Match: NRAM2_ARATH (Metal transporter Nramp2 OS=Arabidopsis thaliana GN=NRAMP2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 6.258e-23
Identity = 52/105 (49.52%), Postives = 69/105 (65.71%), Query Frame = 3
Query:  159 PDDPNYKKP----GWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLGKNCL 461
            PDDP          WR+   F GPGFL+S+A+LDPGNLE DLQAGA   Y LLW+++      L+IQ L+A +GV+TG+HL+ELC+ EYP   +Y LW + +  L
Sbjct:   51 PDDPTTGDTPPPFSWRKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQMLSARVGVATGRHLAELCRDEYPTWARYVLWSMAELAL 155          
BLAST of EY678083 vs. ExPASy Swiss-Prot
Match: NRAM3_ARATH (Metal transporter Nramp3 OS=Arabidopsis thaliana GN=NRAMP3 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 6.919e-22
Identity = 54/120 (45.00%), Postives = 78/120 (65.00%), Query Frame = 3
Query:  189 WRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLGKNCLS*LLISQK*LGQPLH*IYLFN--IPVWGG 542
            W++   F GPGFL+S+A+LDPGNLE DLQAGA   Y LLW+++      L++Q L+A LGV+TG+HL+ELC+ EYP   +  LW++ +  L    I Q+ +G  +    L N  +P+W G
Sbjct:   53 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAVAGYSLLWLLMWATAMGLLVQLLSARLGVATGRHLAELCRDEYPTWARMVLWVMAELALIGSDI-QEVIGSAIAIKILSNGILPLWAG 171          
BLAST of EY678083 vs. ExPASy Swiss-Prot
Match: NRAM2_HUMAN (Natural resistance-associated macrophage protein 2 OS=Homo sapiens GN=SLC11A2 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.541e-21
Identity = 52/128 (40.62%), Postives = 85/128 (66.41%), Query Frame = 3
Query:  165 DPNYKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLGKNCLS*LLISQK*LGQ--PLH*IYLFNIPVWGG 542
            +  Y    +R+  +F GPGFL+S+AYLDPGN+E+DLQ+GA   ++LLW++L+  +  L++Q LAA LGV TG HL+E+C  +YP + +  LWL+ +  +    + Q+ +G    ++ + +  IP+WGG
Sbjct:   59 EEEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWILLLATLVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRVILWLMVELAIIGSDM-QEVIGSAIAINLLSVGRIPLWGG 185          
BLAST of EY678083 vs. ExPASy Swiss-Prot
Match: NRAM1_DICDI (Metal transporter nramp1 homolog OS=Dictyostelium discoideum GN=nramp1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.013e-21
Identity = 62/154 (40.26%), Postives = 89/154 (57.79%), Query Frame = 3
Query:  162 DDPNYKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLGKNCLS*LLISQK*LGQPLH*IYLFN--IPVWGGSSSERWPALSLLLGPAKKWGGRNLE 617
            D P+ K   ++   +F GPGFL+S+AYLDPGNLE+D+QAGA   Y+LLWV+    +    +Q LA+ LGV TGKHL+E C+ +YP   +  LWL+ +  +    I Q+ +G  +    L N  IP+W G         + L    +K+G R LE
Sbjct:   62 DKPDSKWINFKTLWAFTGPGFLMSIAYLDPGNLESDIQAGAMAGYQLLWVLFWSTVIGFWLQMLASRLGVVTGKHLAEHCREQYPKTPRLLLWLMTELAIIGSDI-QEVIGTAIALQILSNGHIPLWAGVLFTAADTFTFLF--LEKYGIRKLE 212          
BLAST of EY678083 vs. ExPASy Swiss-Prot
Match: NRAM5_ARATH (Metal transporter Nramp5 OS=Arabidopsis thaliana GN=NRAMP5 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.629e-21
Identity = 58/147 (39.46%), Postives = 87/147 (59.18%), Query Frame = 3
Query:  189 WRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLGKNCLS*LLISQK*LGQPLH*IYLFN--IPVWGGSSSERWPALSLLLGPAKKWGGRNLERL 623
            W +   F GPGFL+S+A+LDPGN+E DLQAGA   Y LLW++L   +  L++Q L+A +GV+TG+HL+E+C++EYP   +  LW + +  L    I Q+ +G  +    L    +P+W G     +     L+   +K G R LE L
Sbjct:   67 WAKLWKFTGPGFLMSIAFLDPGNIEGDLQAGAVAGYSLLWLLLWATLMGLLMQLLSARIGVATGRHLAEICRSEYPSWARILLWFMAEVALIGADI-QEVIGSAIALQILTRGFLPIWVGVIITSFDC--FLISYLEKCGMRKLEGL 210          
The following BLAST results are available for this feature:
BLAST of EY678083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
NRAM6_ARATH1.258e-3145.99Metal transporter Nramp6 OS=Arabidopsis thaliana G... [more]
NRAM1_ARATH1.643e-3145.45Metal transporter Nramp1 OS=Arabidopsis thaliana G... [more]
NRAM4_ARATH2.541e-2442.14Metal transporter Nramp4 OS=Arabidopsis thaliana G... [more]
NRAM2_RAT6.673e-2450.00Natural resistance-associated macrophage protein 2... [more]
NRAM2_MOUSE6.673e-2450.00Natural resistance-associated macrophage protein 2... [more]
NRAM2_ARATH6.258e-2349.52Metal transporter Nramp2 OS=Arabidopsis thaliana G... [more]
NRAM3_ARATH6.919e-2245.00Metal transporter Nramp3 OS=Arabidopsis thaliana G... [more]
NRAM2_HUMAN1.541e-2140.63Natural resistance-associated macrophage protein 2... [more]
NRAM1_DICDI2.013e-2140.26Metal transporter nramp1 homolog OS=Dictyostelium ... [more]
NRAM5_ARATH2.629e-2139.46Metal transporter Nramp5 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-044-B05-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY678083 ID=EY678083; Name=EY678083; organism=Citrus sinensis; type=EST; length=1052bp
TCAACCCCATGGGAAGCAAGCAGCAGCAGGTGATGACAACTGACGCCCTC
GCTCTTCCACAGTCGTGGGGCAGCGGCAGCAACCGCATAGCAGCTATGAA
TGTGCAAGGAAGAACCCCATCACCCAATATCAATACCAGCAAAGACTTTG
GTCATCATCCAGACGACCCAAATTATAAGAAACCTGGATGGAGGAGGTTT
CTCTCATTTGTTGGCCCTGGTTTTCTTGTTTCATTGGCTTATCTTGATCC
TGGCAACCTGGAAACTGACTTGCAAGCTGGTGCTAATCACCGATATGAGC
TGCTGTGGGTGGTTCTCATCGGACTGATCTTTGCTCTCATCATTCAGTCC
CTTGCAGCAAATCTTGGTGTTAGCACGGGGAAACATCTATCTGAATTATG
CAAAGCCGAGTACCCAATAATTGTCAAGTATTGCTTGTGGTTGCTTGGCA
AAAATTGCTTGTCATAGCTGCTGATATCCCAAAAGTAATTGGGACAGCCT
TTGCACTGAATATACTTGTTCAATATCCCAGTATGGGGTGGAAGTTCTTC
TGAACGGTGGCCAGCACTCTCCTTGCTTCTTGGGCCTGCAAAAAAATGGG
GGGGGAGAAACCTGGAAAGGCTGAAAAACAGTGGCTTGGAATTCAAAAAG
GGCTGGCTGGTTTTTTTGGGAAAAATAGATTATTGAAAACCCCCCTGGCC
CCTAAAGGGGCTCAAGGGGGAGTTTTTTGTCCCCCAAACCCCCCGGGCCC
AAAGGAACACACCGGGGGAAAGCCTTTTGCCCCTTTTTGGGGGGGCCCCC
CTAAAGGGCCCCAAAAAATTTTTTTCTTCACATCTTACCTTTGGGGGGGT
TTTCTCACAAAAAAAGGGCCCCAATTTTTTCGCCCAGAAAAAAAAAAAAA
ATGAGTCGGTGTGTCCTTTTTTTTTTTTTTATTTAAAAGAGGGGGGGGGG
GGTGCGCGCTTGTTGTGGGGGAAAACTTTTATTTGGTTAAATCAAGAGAT
AGAAATAAAAATTTTATTTATACTATTATTTTTCTCAGCGGAGCGGAGGG
TG
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