FC871616

Overview
NameFC871616
Unique NameFC871616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10338 contig Csv1_Contig10338:142..532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871616 vs. ExPASy Swiss-Prot
Match: RL142_ARATH (60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.629e-45
Identity = 92/109 (84.40%), Postives = 98/109 (89.91%), Query Frame = 1
Query:   22 VIVHVLDQNRALVDAPDMERGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVHKKRASLNDFDRIKLMLAKIKKGGLVRQELAKLKKENAA 348
            VIV V+DQNRALVDAPDMER QMNFKRLSLTDI IDI RVPKKK LI+AMEKADVKNKWE SSWGRKLIV K+RA+LNDFDR K+MLAKIKK G+VRQELAKLKKE  A
Sbjct:   26 VIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVIDINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGVVRQELAKLKKEITA 134          
BLAST of FC871616 vs. ExPASy Swiss-Prot
Match: RL141_ARATH (60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 3.000e-44
Identity = 90/109 (82.57%), Postives = 98/109 (89.91%), Query Frame = 1
Query:   22 VIVHVLDQNRALVDAPDMERGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVHKKRASLNDFDRIKLMLAKIKKGGLVRQELAKLKKENAA 348
            VIV V+DQNRALVDAPDMER QMN KRLSLTDI IDI RVPKKK LI+AMEKADVKNKWE SSWGRKLIV K+RA+LNDFDR K+MLAKIK+ G+VRQELAKLK+E AA
Sbjct:   26 VIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVIDINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGIVRQELAKLKREIAA 134          
BLAST of FC871616 vs. ExPASy Swiss-Prot
Match: RL14_PEA (Probable 60S ribosomal protein L14 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.647e-40
Identity = 84/111 (75.68%), Postives = 91/111 (81.98%), Query Frame = 1
Query:   13 RHAVIVHVLDQNRALVDAPDMERGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVHKKRASLNDFDRIKLMLAKIKKGGLVRQELAKLKKENA 345
            R  VIV V+DQ RALVDAPDMER  +NFKRLSLTD+KIDI RVPKKK LI A+E ADVKNKW  SSWGRKLIV K RA+LNDFDR K+MLAKIK+   VRQELAKLKK  A
Sbjct:   23 RLVVIVDVIDQTRALVDAPDMERSPINFKRLSLTDLKIDIKRVPKKKDLIKALEAADVKNKWAKSSWGRKLIVKKTRAALNDFDRFKIMLAKIKRAAGVRQELAKLKKTAA 133          
BLAST of FC871616 vs. ExPASy Swiss-Prot
Match: RL14_LUMRU (60S ribosomal protein L14 OS=Lumbricus rubellus GN=RPL14 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.833e-17
Identity = 47/106 (44.34%), Postives = 63/106 (59.43%), Query Frame = 1
Query:   25 IVHVLDQNRALVDAP--DMERGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVHKKRASLNDFDRIKLMLAKIKKGGLVRQELAKLKK 336
            IV V+DQNRALVD P   + R  MNFK L LT++K   P   K   +  A EK ++  KWE S   +K+   +KR +L DF+R KLM AK  +  L++ E  KL+K
Sbjct:   27 IVDVIDQNRALVDGPCTHVARKSMNFKELELTNLKAKFPHSAKTGVVKKAWEKDEISKKWEESHLAKKIAAKEKRKTLTDFERFKLMKAKQARNRLIKIEFGKLRK 132          
BLAST of FC871616 vs. ExPASy Swiss-Prot
Match: RL14_PIG (60S ribosomal protein L14 OS=Sus scrofa GN=RPL14 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.126e-17
Identity = 44/106 (41.51%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   25 IVHVLDQNRALVDAP--DMERGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVHKKRASLNDFDRIKLMLAKIKKGGLVRQELAKLKK 336
            IV V+DQNRALVD P   + R  M FK + LTD  +  P   ++K +  A EKAD+  KW ++ W +K+   +K+A + DFDR K+M A+  +  L++ E+ KL+K
Sbjct:   27 IVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKLEVKKLQK 132          
BLAST of FC871616 vs. ExPASy Swiss-Prot
Match: RL14_BOVIN (60S ribosomal protein L14 OS=Bos taurus GN=RPL14 PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 4.083e-17
Identity = 44/106 (41.51%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   25 IVHVLDQNRALVDAP--DMERGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVHKKRASLNDFDRIKLMLAKIKKGGLVRQELAKLKK 336
            IV V+DQNRALVD P   + R  M FK + LTD  +  P   ++K +  A EKAD+  KW ++ W +K+   +K+A + DFDR K+M A+  +  L++ E+ KL+K
Sbjct:   27 IVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKIEVKKLQK 132          
BLAST of FC871616 vs. ExPASy Swiss-Prot
Match: RL14_HUMAN (60S ribosomal protein L14 OS=Homo sapiens GN=RPL14 PE=1 SV=4)

HSP 1 Score: 86.2705 bits (212), Expect = 5.333e-17
Identity = 42/106 (39.62%), Postives = 65/106 (61.32%), Query Frame = 1
Query:   25 IVHVLDQNRALVDAP--DMERGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVHKKRASLNDFDRIKLMLAKIKKGGLVRQELAKLKK 336
            IV V+DQNRALVD P   + R  M FK + LTD  +  P    +K +  A +KAD+  KW ++ W +K+   +++A + DFDR K+M AK  +  +++ E+ KL+K
Sbjct:   27 IVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQK 132          
BLAST of FC871616 vs. ExPASy Swiss-Prot
Match: RL14_RAT (60S ribosomal protein L14 OS=Rattus norvegicus GN=Rpl14 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.965e-17
Identity = 42/106 (39.62%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   25 IVHVLDQNRALVDAP--DMERGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVHKKRASLNDFDRIKLMLAKIKKGGLVRQELAKLKK 336
            IV V+DQNRALVD P   + R  M FK + LTD  +  P   ++K +  A EKAD+  KW ++ W +K+   +++A + DFDR K+M AK  +  +++ E+ KL++
Sbjct:   27 IVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of FC871616 vs. ExPASy Swiss-Prot
Match: RL14_MOUSE (60S ribosomal protein L14 OS=Mus musculus GN=Rpl14 PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.965e-17
Identity = 42/106 (39.62%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   25 IVHVLDQNRALVDAP--DMERGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVHKKRASLNDFDRIKLMLAKIKKGGLVRQELAKLKK 336
            IV V+DQNRALVD P   + R  M FK + LTD  +  P   ++K +  A EKAD+  KW ++ W +K+   +++A + DFDR K+M AK  +  +++ E+ KL++
Sbjct:   27 IVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of FC871616 vs. ExPASy Swiss-Prot
Match: RL14_GRIJA (60S ribosomal protein L14 OS=Griffithsia japonica GN=RPL14 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.647e-16
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 1
Query:   22 VIVHVLDQNRALVDAPD--MERGQMNFKRLSLTDIKID-IPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVHKKRASLNDFDRIKLMLAKIKKGGLVRQELAKLK 333
            VIV +LDQNR LVD+P   ++R  +N KR++LT IK+D I R      +      A V   + +S WG+KL   +KRA+L+DF R K+M+A++KK   +  ELAKLK
Sbjct:   26 VIVDILDQNRILVDSPSHGLKRKVINVKRIALTSIKVDDIARGAPVAEVKSKYTAAKVDETFAASGWGKKLAKREKRAALDDFGRFKVMVARMKKSKAINAELAKLK 132          
The following BLAST results are available for this feature:
BLAST of FC871616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL142_ARATH4.629e-4584.4060S ribosomal protein L14-2 OS=Arabidopsis thalian... [more]
RL141_ARATH3.000e-4482.5760S ribosomal protein L14-1 OS=Arabidopsis thalian... [more]
RL14_PEA7.647e-4075.68Probable 60S ribosomal protein L14 OS=Pisum sativu... [more]
RL14_LUMRU1.833e-1744.3460S ribosomal protein L14 OS=Lumbricus rubellus GN... [more]
RL14_PIG3.126e-1741.5160S ribosomal protein L14 OS=Sus scrofa GN=RPL14 P... [more]
RL14_BOVIN4.083e-1741.5160S ribosomal protein L14 OS=Bos taurus GN=RPL14 P... [more]
RL14_HUMAN5.333e-1739.6260S ribosomal protein L14 OS=Homo sapiens GN=RPL14... [more]
RL14_RAT6.965e-1739.6260S ribosomal protein L14 OS=Rattus norvegicus GN=... [more]
RL14_MOUSE6.965e-1739.6260S ribosomal protein L14 OS=Mus musculus GN=Rpl14... [more]
RL14_GRIJA2.647e-1644.8660S ribosomal protein L14 OS=Griffithsia japonica ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1BF11FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1BF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871616 ID=FC871616; Name=FC871616; organism=Citrus sinensis; type=EST; length=391bp
AAAAAAACAGAAAGGCACGCCGTCATCGTACATGTCTTAGATCAAAACAG
AGCTCTAGTTGATGCCCCTGATATGGAGAGAGGCCAAATGAACTTCAAGA
GGCTTTCACTGACTGATATCAAAATTGACATTCCCCGTGTACCGAAGAAG
AAGACATTGATTGATGCTATGGAGAAGGCTGATGTTAAGAACAAGTGGGA
GAGTAGCTCTTGGGGAAGAAAGCTGATTGTTCACAAGAAGAGAGCATCAC
TTAACGACTTTGACAGGATCAAGCTTATGTTGGCCAAGATCAAGAAGGGA
GGCTTGGTCAGGCAGGAGCTTGCGAAGCTGAAGAAGGAGAATGCAGCCTA
ATGCTATCTGAACTGTAGCTTCCAACTTTGTTATGATGATG
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