FC871604
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: AB28B_ARATH (ABC transporter B family member 28 OS=Arabidopsis thaliana GN=ABCB28 PE=2 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 6.167e-42 Identity = 93/143 (65.03%), Postives = 102/143 (71.33%), Query Frame = 2 Query: 2 TALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVSFSSQA 430 TALVGSSGAGKSTIVQLLARFYEPT GRITVGGED+R FDKSEWA+VVSIVNQEPVLFS+SV ENIAYGLP+E+VS SLPQGYDT +AIAR+LLKNAPILILDE + + A Sbjct: 501 TALVGSSGAGKSTIVQLLARFYEPTQGRITVGGEDVRMFDKSEWAKVVSIVNQEPVLFSLSVAENIAYGLPNEHVSKDDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRVAIARSLLKNAPILILDEATSALDA 643
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: MDR2_MOUSE (Multidrug resistance protein 2 OS=Mus musculus GN=Abcb4 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 6.001e-21 Identity = 57/137 (41.61%), Postives = 77/137 (56.20%), Query Frame = 2 Query: 5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415 ALVG+SG GKST VQLL R Y+PT G+I++ G+D+R F+ ++ +V+QEPVLFS ++ ENI YG NV+ LPQ +DT IAIARAL++N IL+LDE + Sbjct: 423 ALVGNSGCGKSTTVQLLQRLYDPTEGKISIDGQDIRNFNVRCLREIIGVVSQEPVLFSTTIAENIRYG--RGNVTMDEIEKAVKEANAYDFIMKLPQKFDTLVGDRGAQLSGGQKQRIAIARALVRNPKILLLDEAT 557 HSP 2 Score: 92.0485 bits (227), Expect = 3.641e-18 Identity = 54/138 (39.13%), Postives = 74/138 (53.62%), Query Frame = 2 Query: 5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV-VSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415 ALVGSSG GKST+VQLL RFY+P G + + G++ + + +W R + IV+QEP+LF S+ ENIAYG V +LPQ Y+T IAIARAL++ +L+LDE + Sbjct: 1063 ALVGSSGCGKSTVVQLLERFYDPMAGSVLLDGQEAKKLN-VQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVPHDEIVRAAKEANIHPFIETLPQKYNTRVGDKGTQLSGGQKQRIAIARALIRQPRVLLLDEAT 1199
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: ABCBA_MOUSE (ATP-binding cassette sub-family B member 10, mitochondrial OS=Mus musculus GN=Abcb10 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.024e-20 Identity = 60/144 (41.67%), Postives = 77/144 (53.47%), Query Frame = 2 Query: 2 TALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPD-ENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVSFSSQA 430 TALVG SG+GKST+V LL R Y+P G +++ G D+R + + V+QEPVLFS SV ENIAYG + +V+ S PQG+DT IAIARALLKN IL+LDE + + A Sbjct: 488 TALVGPSGSGKSTVVSLLLRLYDPNSGTVSLDGHDIRQLNPVWLRSKIGTVSQEPVLFSCSVAENIAYGADNLSSVTAQQVERAAEVANAAEFIRSFPQGFDTVVGEKGILLSGGQKQRIAIARALLKNPKILLLDEATSALDA 631
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: MDR3_HUMAN (Multidrug resistance protein 3 OS=Homo sapiens GN=ABCB4 PE=1 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 1.746e-20 Identity = 56/137 (40.88%), Postives = 75/137 (54.74%), Query Frame = 2 Query: 5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415 ALVGSSG GKST VQL+ R Y+P G I + G+D+R F+ + ++ +V+QEPVLFS ++ ENI YG NV+ LPQ +DT IAIARAL++N IL+LDE + Sbjct: 426 ALVGSSGCGKSTTVQLIQRLYDPDEGTINIDGQDIRNFNVNYLREIIGVVSQEPVLFSTTIAENICYG--RGNVTMDEIKKAVKEANAYEFIMKLPQKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 560 HSP 2 Score: 87.0409 bits (214), Expect = 1.171e-16 Identity = 56/145 (38.62%), Postives = 74/145 (51.03%), Query Frame = 2 Query: 5 ALVGSSGAGKSTIVQLLARFYEPTGGRITV-------GGEDLRTFDKSEWARV-VSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415 ALVGSSG GKST+VQLL RFY+P G + V G++ + + +W R + IV+QEP+LF S+ ENIAYG VS +LP Y+T IAIARAL++ IL+LDE + Sbjct: 1066 ALVGSSGCGKSTVVQLLERFYDPLAGTVFVDFGFQLLDGQEAKKLN-VQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSQDEIVSAAKAANIHPFIETLPHKYETRVGDKGTQLSGGQKQRIAIARALIRQPQILLLDEAT 1209
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: MDR1_HUMAN (Multidrug resistance protein 1 OS=Homo sapiens GN=ABCB1 PE=1 SV=3) HSP 1 Score: 98.9821 bits (245), Expect = 2.978e-20 Identity = 55/137 (40.15%), Postives = 76/137 (55.47%), Query Frame = 2 Query: 5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415 ALVG+SG GKST VQL+ R Y+PT G ++V G+D+RT + ++ +V+QEPVLF+ ++ ENI YG ENV+ LP +DT IAIARAL++N IL+LDE + Sbjct: 424 ALVGNSGCGKSTTVQLMQRLYDPTEGMVSVDGQDIRTINVRFLREIIGVVSQEPVLFATTIAENIRYG--RENVTMDEIEKAVKEANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 558 HSP 2 Score: 94.7449 bits (234), Expect = 5.617e-19 Identity = 56/138 (40.58%), Postives = 75/138 (54.35%), Query Frame = 2 Query: 5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV-VSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415 ALVGSSG GKST+VQLL RFY+P G++ + G++++ + +W R + IV+QEP+LF S+ ENIAYG VS SLP Y T IAIARAL++ IL+LDE + Sbjct: 1067 ALVGSSGCGKSTVVQLLERFYDPLAGKVLLDGKEIKRLN-VQWLRAHLGIVSQEPILFDCSIAENIAYGDNSRVVSQEEIVRAAKEANIHAFIESLPNKYSTKVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEAT 1203
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: MDR1_CRIGR (Multidrug resistance protein 1 OS=Cricetulus griseus GN=ABCB1 PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 2.978e-20 Identity = 55/137 (40.15%), Postives = 76/137 (55.47%), Query Frame = 2 Query: 5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415 ALVG+SG GKST VQLL R Y+PT G +++ G+D+RT + ++ +V+QEPVLF+ ++ ENI YG ENV+ LP +DT IAIARAL++N IL+LDE + Sbjct: 421 ALVGNSGCGKSTTVQLLQRLYDPTEGVVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG--RENVTMDEIEKAVKEANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 555 HSP 2 Score: 92.4337 bits (228), Expect = 2.787e-18 Identity = 56/138 (40.58%), Postives = 74/138 (53.62%), Query Frame = 2 Query: 5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV-VSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415 ALVGSSG GKST+VQLL RFY+P G + + G+++ + +W R + IV+QEP+LF S+ ENIAYG VS SLP Y+T IAIARAL++ IL+LDE + Sbjct: 1064 ALVGSSGCGKSTVVQLLERFYDPMAGTVFLDGKEVNQLN-VQWLRAHLGIVSQEPILFDCSIAENIAYGDNSRVVSQDEIERAAKEANIHQFIESLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEAT 1200
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: MDR3_CRIGR (Multidrug resistance protein 3 OS=Cricetulus griseus GN=PGY3 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.890e-20 Identity = 55/137 (40.15%), Postives = 76/137 (55.47%), Query Frame = 2 Query: 5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415 ALVG+SG GK+T +QLL R Y+PT G I++ G+D+R F+ ++ +V+QEPVLFS ++ ENI YG NV+ LPQ +DT IAIARAL++N IL+LDE + Sbjct: 426 ALVGNSGCGKTTTLQLLQRLYDPTEGTISIDGQDIRNFNVRYLREIIGVVSQEPVLFSTTIAENIRYG--RGNVTMEEIKKAVKEANAYEFIMKLPQKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 560 HSP 2 Score: 90.8929 bits (224), Expect = 8.110e-18 Identity = 54/138 (39.13%), Postives = 73/138 (52.90%), Query Frame = 2 Query: 5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV-VSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415 ALVGSSG GKST+VQLL RFY+P G + + G++ + + +W R + IV+QEPVLF S+ ENIAYG VS +LPQ Y T +AI RAL++ +L+LDE + Sbjct: 1068 ALVGSSGCGKSTVVQLLERFYDPMAGTVLLDGQEAKKLN-IQWLRAQLGIVSQEPVLFDCSIAENIAYGDNSRVVSQDEIVRAAKAANIHPFIETLPQKYKTRVGDKGTQLSGGQKQRLAIRRALIRQPRVLLLDEAT 1204
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: MDR2_RAT (Multidrug resistance protein 2 OS=Rattus norvegicus GN=Abcb4 PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.890e-20 Identity = 57/137 (41.61%), Postives = 75/137 (54.74%), Query Frame = 2 Query: 5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415 ALVG+SG GKST VQLL R Y+PT G I++ G+D+R F+ + +V+QEPVLFS ++ ENI YG NV+ LPQ +DT IAIARAL++N IL+LDE + Sbjct: 423 ALVGNSGCGKSTTVQLLQRLYDPTEGTISIDGQDIRNFNVRCLREFIGVVSQEPVLFSTTIAENIRYG--RGNVTMDEIKKAVKEANAYDFIMKLPQKFDTLVGDRGAQLSGGQKQRIAIARALVRNPKILLLDEAT 557 HSP 2 Score: 92.8189 bits (229), Expect = 2.134e-18 Identity = 54/138 (39.13%), Postives = 75/138 (54.35%), Query Frame = 2 Query: 5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV-VSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415 ALVGSSG GKST+VQLL RFY+P G + + G++ + + +W R + IV+QEP+LF S+ +NIAYG VS +LPQ Y+T IAIARAL++ +L+LDE + Sbjct: 1065 ALVGSSGCGKSTVVQLLERFYDPMAGTVLLDGQEAKKLN-VQWLRAQLGIVSQEPILFDCSIAKNIAYGDNSRVVSQDEIVRAAKEANIHPFIETLPQKYETRVGDKGTQLSGGQKQRIAIARALIRQPRVLLLDEAT 1201
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: MDR2_CRIGR (Multidrug resistance protein 2 OS=Cricetulus griseus GN=PGY2 PE=2 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 3.890e-20 Identity = 55/137 (40.15%), Postives = 75/137 (54.74%), Query Frame = 2 Query: 5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415 ALVG SG GKST VQLL R Y+PT G +++ G+D+RT + ++ +V+QEPVLF+ ++ ENI YG ENV+ LP +DT IAIARAL++N IL+LDE + Sbjct: 423 ALVGKSGCGKSTTVQLLQRLYDPTEGVVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG--RENVTMDEIEKAVKEANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 557 HSP 2 Score: 93.5893 bits (231), Expect = 1.251e-18 Identity = 56/138 (40.58%), Postives = 75/138 (54.35%), Query Frame = 2 Query: 5 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV-VSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDEVS 415 ALVGSSG GKST+VQLL RFY+P G + + G++++ + +W R + IV+QEP+LF S+ ENIAYG VS SLP Y+T IAIARAL++ IL+LDE + Sbjct: 1065 ALVGSSGCGKSTVVQLLERFYDPMAGTVFLDGKEIKQLN-VQWLRAHLGIVSQEPILFDCSIAENIAYGDNSRVVSQDEIERAAKEANIHQFIESLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEAT 1201
BLAST of FC871604 vs. ExPASy Swiss-Prot
Match: ABCB3_DICDI (ABC transporter B family member 3 OS=Dictyostelium discoideum GN=abcB3 PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.890e-20 Identity = 56/134 (41.79%), Postives = 72/134 (53.73%), Query Frame = 2 Query: 8 LVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDE 409 LVG SG GKSTI+ LL RFY+P G I + GED+R F+ + + +VNQEPVLF+ ++ ENI YG E + LPQGY+T IAIARA++KN IL+LDE Sbjct: 547 LVGDSGGGKSTIISLLERFYDPCQGEILLDGEDIRKFNVRGLRQKIGLVNQEPVLFATTISENIRYG--KEGATQDEIEEAAKLANAHSFISQLPQGYNTLVGEKGVQMSGGQRQRIAIARAVIKNPNILLLDE 678 HSP 2 Score: 83.9593 bits (206), Expect = 9.914e-16 Identity = 49/136 (36.03%), Postives = 66/136 (48.53%), Query Frame = 2 Query: 2 TALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSXXXXXXXXXXXXXXXXXXSLPQGYDTXXXXXXXXXXXXXXXXIAIARALLKNAPILILDE 409 TALVG SG GKST + LL RFY P G I + G +++ + + +V QEP LFS ++ +NI YG D + LP GY+T IAIARA+++N IL+LDE Sbjct: 1223 TALVGDSGGGKSTCLSLLQRFYNPVVGEIFIDGHNIKNLNVRHLRHLFGLVGQEPTLFSGTIADNIRYGKHD--ATQEEIEEASKLSNSHSFIIDLPNGYNTELGEKYTQLSGGQKQRIAIARAIIRNPKILLLDE 1356 The following BLAST results are available for this feature:
BLAST of FC871604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 304
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC871604 ID=FC871604; Name=FC871604; organism=Citrus sinensis; type=EST; length=754bpback to top |