FC871601

Overview
NameFC871601
Unique NameFC871601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length429
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1737 contig Csv1_Contig1737:636..1064. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871601 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.112e-19
Identity = 42/45 (93.33%), Postives = 45/45 (100.00%), Query Frame = 1
Query:    1 LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 135
            LSICSLLTDPNPDDPLVPEIAHMYK+D+AKYEATAR+WTQKYAMG
Sbjct:  104 LSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148          
BLAST of FC871601 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.112e-19
Identity = 42/45 (93.33%), Postives = 45/45 (100.00%), Query Frame = 1
Query:    1 LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 135
            LSICSLLTDPNPDDPLVPEIAHMYK+D+AKYE+TARSWTQKYAMG
Sbjct:  104 LSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148          
BLAST of FC871601 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.758e-19
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    1 LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 135
            LSICSLLTDPNPDDPLVPEIAHMYK+D+AKYE TARSWTQKYAMG
Sbjct:  104 LSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148          
BLAST of FC871601 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.704e-19
Identity = 41/45 (91.11%), Postives = 45/45 (100.00%), Query Frame = 1
Query:    1 LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 135
            LSICSLLTDPNPDDPLVPEIAHMYK+D++KYE+TARSWTQKYAMG
Sbjct:  104 LSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148          
BLAST of FC871601 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.704e-19
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    1 LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 135
            LSICSLLTDPNPDDPLVPEIAHMYK+DK KYE+TARSWTQKYAMG
Sbjct:  104 LSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148          
BLAST of FC871601 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.048e-18
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    1 LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 135
            LSICSLLTDPNPDDPLVPEIAHMYK+DK KYE+TAR+WTQKYAMG
Sbjct:  104 LSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148          
BLAST of FC871601 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.201e-18
Identity = 39/45 (86.67%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    1 LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 135
            LSICSLLTDPNPDDPLVPEIAH+YK+D+ KYE+TA+SWTQKYAMG
Sbjct:  104 LSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148          
BLAST of FC871601 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.976e-17
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 1
Query:    1 LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 132
            LSICSLLTDPNPDDPLVPEIAH+YK+DK KYEA ARSWTQKYA+
Sbjct:  104 LSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYAL 147          
BLAST of FC871601 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.371e-17
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    1 LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 135
            LSICSLLTDPNP+DPLVPEIAH+YK DK+KYE+TA+ WTQKYAMG
Sbjct:  105 LSICSLLTDPNPNDPLVPEIAHLYKVDKSKYESTAQKWTQKYAMG 149          
BLAST of FC871601 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.727e-16
Identity = 35/44 (79.55%), Postives = 43/44 (97.73%), Query Frame = 1
Query:    1 LSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 132
            LSICS+LTDPNPD+PLVPEIAH+YK+D+A+YEATAR WT+KYA+
Sbjct:  104 LSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKYAI 147          
The following BLAST results are available for this feature:
BLAST of FC871601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
UBC8_ARATH2.112e-1993.33Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC28_ARATH2.112e-1993.33Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC4_SOLLC2.758e-1993.33Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC11_ARATH4.704e-1991.11Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC10_ARATH4.704e-1993.33Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC9_ARATH1.048e-1891.11SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC30_ARATH5.201e-1886.67Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC29_ARATH1.976e-1788.64Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC12_ARATH3.371e-1784.44Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBC1_COLGL3.727e-1679.55Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3AB04FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3AB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871601 ID=FC871601; Name=FC871601; organism=Citrus sinensis; type=EST; length=429bp
CTTTCTATCTGCTCGTTGCTTACTGACCCAAATCCTGACGACCCGCTTGT
ACCGGAGATTGCTCACATGTACAAGTCCGACAAGGCCAAATATGAAGCCA
CTGCCAGGAGCTGGACACAGAAGTATGCCATGGGATAGTTGTTTGGATAT
TGCAGAAATGGAACTCATTTATATGAAATATGTTGTGTTTTTTTCTCCTT
TTTCTTCAATCTTGCTTCGGGAAGGGGATGTTTTGTATTTTAGTAATGAG
GAAGGATGTTTGGGGAGGAGTTGCAAGGGNAAGACGTTTTTGTTAATGTT
GAATGTTTCTTGTTTGATTTTCCTATCATTCAATGTAGTTTATTGTCCTA
TGGAGGGAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAATAAAAAAA
ATAAAAAAAAAANAAAGAAAAAAAAAAAA
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