FC871588

Overview
NameFC871588
Unique NameFC871588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4206 contig Csv1_Contig4206:612..1469. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871588 vs. ExPASy Swiss-Prot
Match: RH34_ORYSJ (DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sativa subsp. japonica GN=Os03g0566800 PE=2 SV=1)

HSP 1 Score: 419.468 bits (1077), Expect = 1.218e-116
Identity = 205/219 (93.61%), Postives = 213/219 (97.26%), Query Frame = 3 
Query:    3 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 659
            L RGFKDQIYDVYRYLPP+LQV LISATLPHEILEMT+KFMTDPV+ILVKRDELTLEGIKQFFVAVE+EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTE+MR  NFTVS+MHGDMPQKERDAIMGEFRSG TRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK +DI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  186 LGRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADLI 404
[Close]
BLAST of FC871588 vs. ExPASy Swiss-Prot
Match: RH2_ORYSJ (DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sativa subsp. japonica GN=Os01g0639100 PE=2 SV=1)

HSP 1 Score: 419.468 bits (1077), Expect = 1.218e-116
Identity = 205/219 (93.61%), Postives = 213/219 (97.26%), Query Frame = 3 
Query:    3 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 659
            L RGFKDQIYDVYRYLPP+LQV LISATLPHEILEMT+KFMTDPV+ILVKRDELTLEGIKQFFVAVE+EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTE+MR  NFTVS+MHGDMPQKERDAIMGEFRSG TRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK +DI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  186 LGRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADLI 404
[Close]
BLAST of FC871588 vs. ExPASy Swiss-Prot
Match: IF4A3_NICPL (Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 419.468 bits (1077), Expect = 1.218e-116
Identity = 207/219 (94.52%), Postives = 214/219 (97.72%), Query Frame = 3 
Query:    3 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 659
            LSRGFKDQIYDVYRYLPP+LQVVLISATLP+EILE+T+KFMTDPV+ILVKRDELTLEGIKQFFVAVE+EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLT KMR  NFTVSSMHGDMPQKERDAIM EFR GTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK+DDIKILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  173 LSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMRENNFTVSSMHGDMPQKERDAIMAEFRGGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 391
[Close]
BLAST of FC871588 vs. ExPASy Swiss-Prot
Match: RH2_ARATH (DEAD-box ATP-dependent RNA helicase 2 OS=Arabidopsis thaliana GN=RH2 PE=2 SV=2)

HSP 1 Score: 418.698 bits (1075), Expect = 2.077e-116
Identity = 205/219 (93.61%), Postives = 215/219 (98.17%), Query Frame = 3 
Query:    3 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 659
            LSRGFKDQIYDVYRYLPPDLQV L+SATLPHEILEMT+KFMT+PVKILVKRDELTLEGIKQFFVAVE+EEWKFDTLCDLYDTLTITQAVIFCNTKRKVD+L+EKMR +NFTVSSMHGDMPQKERDAIM EFRSG +RVLITTDVWARG+DVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK+DDIKILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  190 LSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 408
[Close]
BLAST of FC871588 vs. ExPASy Swiss-Prot
Match: IF4A3_TAEGU (Eukaryotic initiation factor 4A-III OS=Taeniopygia guttata GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 408.683 bits (1049), Expect = 2.149e-113
Identity = 199/219 (90.87%), Postives = 211/219 (96.35%), Query Frame = 3 
Query:    3 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 659
            L++GFK+QIYDVYRYLPP  QVVLISATLPHEILEMT KFMTDP++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR  NFTVSSMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  192 LNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 410
[Close]
BLAST of FC871588 vs. ExPASy Swiss-Prot
Match: IF4A3_RAT (Eukaryotic initiation factor 4A-III OS=Rattus norvegicus GN=Eif4a3 PE=1 SV=1)

HSP 1 Score: 408.683 bits (1049), Expect = 2.149e-113
Identity = 199/219 (90.87%), Postives = 211/219 (96.35%), Query Frame = 3 
Query:    3 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 659
            L++GFK+QIYDVYRYLPP  QVVLISATLPHEILEMT KFMTDP++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR  NFTVSSMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  193 LNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411
[Close]
BLAST of FC871588 vs. ExPASy Swiss-Prot
Match: IF4A3_PIG (Eukaryotic initiation factor 4A-III OS=Sus scrofa GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 408.683 bits (1049), Expect = 2.149e-113
Identity = 199/219 (90.87%), Postives = 211/219 (96.35%), Query Frame = 3 
Query:    3 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 659
            L++GFK+QIYDVYRYLPP  QVVLISATLPHEILEMT KFMTDP++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR  NFTVSSMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  193 LNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411
[Close]
BLAST of FC871588 vs. ExPASy Swiss-Prot
Match: IF4A3_MOUSE (Eukaryotic initiation factor 4A-III OS=Mus musculus GN=Eif4a3 PE=2 SV=3)

HSP 1 Score: 408.683 bits (1049), Expect = 2.149e-113
Identity = 199/219 (90.87%), Postives = 211/219 (96.35%), Query Frame = 3 
Query:    3 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 659
            L++GFK+QIYDVYRYLPP  QVVLISATLPHEILEMT KFMTDP++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR  NFTVSSMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  193 LNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411
[Close]
BLAST of FC871588 vs. ExPASy Swiss-Prot
Match: IF4A3_MACFA (Eukaryotic initiation factor 4A-III OS=Macaca fascicularis GN=EIF4A3 PE=2 SV=3)

HSP 1 Score: 408.683 bits (1049), Expect = 2.149e-113
Identity = 199/219 (90.87%), Postives = 211/219 (96.35%), Query Frame = 3 
Query:    3 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 659
            L++GFK+QIYDVYRYLPP  QVVLISATLPHEILEMT KFMTDP++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR  NFTVSSMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  193 LNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411
[Close]
BLAST of FC871588 vs. ExPASy Swiss-Prot
Match: IF4A3_HUMAN (Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4)

HSP 1 Score: 408.683 bits (1049), Expect = 2.149e-113
Identity = 199/219 (90.87%), Postives = 211/219 (96.35%), Query Frame = 3 
Query:    3 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 659
            L++GFK+QIYDVYRYLPP  QVVLISATLPHEILEMT KFMTDP++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR  NFTVSSMHGDMPQKER++IM EFRSG +RVLI+TDVWARGLDV QVSL+INYDLPNNRELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  193 LNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411
The following BLAST results are available for this feature:
BLAST of FC871588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH34_ORYSJ1.218e-11693.61DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sa... [more]
RH2_ORYSJ1.218e-11693.61DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sat... [more]
IF4A3_NICPL1.218e-11694.52Eukaryotic initiation factor 4A-3 OS=Nicotiana plu... [more]
RH2_ARATH2.077e-11693.61DEAD-box ATP-dependent RNA helicase 2 OS=Arabidops... [more]
IF4A3_TAEGU2.149e-11390.87Eukaryotic initiation factor 4A-III OS=Taeniopygia... [more]
IF4A3_RAT2.149e-11390.87Eukaryotic initiation factor 4A-III OS=Rattus norv... [more]
IF4A3_PIG2.149e-11390.87Eukaryotic initiation factor 4A-III OS=Sus scrofa ... [more]
IF4A3_MOUSE2.149e-11390.87Eukaryotic initiation factor 4A-III OS=Mus musculu... [more]
IF4A3_MACFA2.149e-11390.87Eukaryotic initiation factor 4A-III OS=Macaca fasc... [more]
IF4A3_HUMAN2.149e-11390.87Eukaryotic initiation factor 4A-III OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1BE01FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1BE01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871588 ID=FC871588; Name=FC871588; organism=Citrus sinensis; type=EST; length=857bp
TGCTGAGCAGAGGGTTCAAGGATCAAATTTATGATGTGTACCGTTATCTT
CCACCGGATCTTCAGGTTGTTTTGATATCTGCCACCCTTCCTCACGAAAT
ATTGGAGATGACGACCAAATTCATGACAGATCCTGTAAAGATTCTTGTGA
AGCGTGATGAGTTGACTTTGGAGGGAATCAAGCAATTTTTTGTTGCAGTG
GAAAGAGAGGAGTGGAAGTTTGATACACTCTGTGATCTTTATGATACCCT
TACGATTACACAAGCTGTTATTTTCTGCAACACGAAGCGTAAGGTGGATT
GGCTAACAGAGAAGATGCGCGGCTATAACTTTACTGTCTCATCAATGCAT
GGAGACATGCCTCAGAAGGAAAGAGATGCAATTATGGGAGAATTTCGGTC
TGGGACAACCCGTGTGCTCATCACAACTGATGTTTGGGCACGAGGACTTG
ATGTTCAGCAGGTTTCTTTGGTGATAAATTATGACCTTCCTAACAATCGT
GAGCTTTATATTCACCGGATTGGTCGTTCTGGACGTTTTGGACGCAAGGG
TGTAGCAATAAATTTTGTCAAAAACGATGATATCAAGATTCTTAGAGATA
TCGAGCAATATTACAGTACCCAGATTGATGAAATGCCAATGAATGTTGCT
GATCTGATATAAGAGATGTTTGTGATCTCGTCTGCCAGAGTGGAGGTTAT
GGGATTGATCAATGAAAGGTTGAAGACAATTGTGTGATTGACAGTTTCTG
CAAGTGTGACATTGTCTTTGTTTTTGTGAGGAGTTTGTATAATACAGGAT
GTTCTCATATTTTCTGTATGGTATTGATGACAAAAAAAAGAAGAGAGTAG
GCATTAA
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