EY679933

Overview
NameEY679933
Unique NameEY679933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY679933 vs. ExPASy Swiss-Prot
Match: TRA1_MAIZE (Putative AC transposase OS=Zea mays PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.710e-19
Identity = 51/118 (43.22%), Postives = 81/118 (68.64%), Query Frame = 3 
Query:   33 YDCVEMKNEVERYLLEPC-EHVDDDDFEILAWWKMNSIKYRVLSHIAKDVFAIPISTVASESAFSTGGRIIDSFRSSLSPKMVEALICSQNWLLHTFVPLQDEPTM-EELEFYEAIMS 380
            YD VE  NE+++Y+ EP  +H     F+IL+WW+    +Y +L+ IA+DV AI +STVASESAFS GGR++D +R+ L  ++VEALIC+++W+  +       PTM  +LE  +++++
Sbjct:  662 YDQVE-SNELDKYMSEPLLKH--SGQFDILSWWRGRVAEYPILTQIARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWVAASRKGATYFPTMIGDLEVLDSVIA 776
[Close]
BLAST of EY679933 vs. ExPASy Swiss-Prot
Match: TRAC9_MAIZE (Putative AC9 transposase OS=Zea mays PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.264e-19
Identity = 46/93 (49.46%), Postives = 69/93 (74.19%), Query Frame = 3 
Query:   33 YDCVEMKNEVERYLLEPC-EHVDDDDFEILAWWKMNSIKYRVLSHIAKDVFAIPISTVASESAFSTGGRIIDSFRSSLSPKMVEALICSQNWL 308
            YD VE  NE+++Y+ EP  +H     F+IL+WW+    +Y +L+ IA+DV AI +STVASESAFS GGR++D +R+ L  ++VEALIC+++W+
Sbjct:  631 YDQVE-SNELDKYMSEPLLKH--SGQFDILSWWRGRVAEYPILTQIARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWV 720
The following BLAST results are available for this feature:
BLAST of EY679933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRA1_MAIZE3.710e-1943.22Putative AC transposase OS=Zea mays PE=2 SV=2[more]
TRAC9_MAIZE8.264e-1949.46Putative AC9 transposase OS=Zea mays PE=4 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-F03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679933 ID=EY679933; Name=EY679933; organism=Citrus sinensis; type=EST; length=814bp
CCACGCGTCCGGTTCAACAAAGAATAGGAAAATATGATTGTGTTGAGATG
AAAAATGAAGTAGAGAGGTACTTGTTGGAGCCATGTGAACATGTTGATGA
CGATGACTTTGAGATTTTGGCATGGTGGAAAATGAACTCAATAAAATATC
GAGTTCTTTCACATATTGCAAAGGATGTGTTTGCAATTCCAATATCTACA
GTAGCTTCAGAATCTGCATTTAGTACTGGAGGACGCATCATTGATTCATT
TCGTAGTTCTTTAAGTCCAAAGATGGTGGAAGCTTTGATATGCTCACAAA
ATTGGTTACTTCACACTTTTGTCCCATTACAAGATGAACCAACGATGGAG
GAGCTTGAGTTTTATGAAGCCATAATGTCAGAGTTTGGATCAAGTGCAAC
AACGGAGGCAATGACTTTAGATTGATGTTATTCTTACAATTTTGGATGAA
GATGCCAGTGAGTGCCATTTGCTTGAGGAAAGATGAAGATGGTCCCCAAA
AGTATCAAAAGTTATCACAACGGCTGGGTGTCCTCATTTGAATGATTTAA
CATTAATAGGTGGCATTTTTAAGGAGCTGCCCTCCACAAATTTTACTCAG
CATTTATTTCACTTTATTATTGGTTAATTTTTAATATCTTTTATTTCCTT
TTTTTTATTATCAATTTACTAATCTATAATAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGGGCGGCCCCCCCTAAAGGATCCCACCTTCCCACCCCGTG
CAACGCAACGCACATAACTCCTCTATTAAGGTTACCCAAATATTCCCATT
CCGCGGGGCCCTCT
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