FC871579

Overview
NameFC871579
Unique NameFC871579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4206 contig Csv1_Contig4206:1112..1613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871579 vs. ExPASy Swiss-Prot
Match: RH2_ARATH (DEAD-box ATP-dependent RNA helicase 2 OS=Arabidopsis thaliana GN=RH2 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 4.056e-23
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 ELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 159
            ELYIHRIGRSGRFGRKGVAINFVK+DDIKILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  356 ELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 408
[Close]
BLAST of FC871579 vs. ExPASy Swiss-Prot
Match: IF4A3_NICPL (Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.056e-23
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 ELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 159
            ELYIHRIGRSGRFGRKGVAINFVK+DDIKILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  339 ELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 391
[Close]
BLAST of FC871579 vs. ExPASy Swiss-Prot
Match: IF4A3_XENTR (Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.298e-23
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 ELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 159
            ELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  363 ELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 415
[Close]
BLAST of FC871579 vs. ExPASy Swiss-Prot
Match: IF4A3_TAEGU (Eukaryotic initiation factor 4A-III OS=Taeniopygia guttata GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.298e-23
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 ELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 159
            ELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  358 ELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 410
[Close]
BLAST of FC871579 vs. ExPASy Swiss-Prot
Match: IF4A3_SALSA (Eukaryotic initiation factor 4A-III OS=Salmo salar GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.298e-23
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 ELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 159
            ELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  354 ELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 406
[Close]
BLAST of FC871579 vs. ExPASy Swiss-Prot
Match: IF4A3_RAT (Eukaryotic initiation factor 4A-III OS=Rattus norvegicus GN=Eif4a3 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.298e-23
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 ELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 159
            ELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  359 ELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411
[Close]
BLAST of FC871579 vs. ExPASy Swiss-Prot
Match: IF4A3_PIG (Eukaryotic initiation factor 4A-III OS=Sus scrofa GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.298e-23
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 ELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 159
            ELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  359 ELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411
[Close]
BLAST of FC871579 vs. ExPASy Swiss-Prot
Match: IF4A3_MOUSE (Eukaryotic initiation factor 4A-III OS=Mus musculus GN=Eif4a3 PE=2 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 5.298e-23
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 ELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 159
            ELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  359 ELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411
[Close]
BLAST of FC871579 vs. ExPASy Swiss-Prot
Match: IF4A3_MACFA (Eukaryotic initiation factor 4A-III OS=Macaca fascicularis GN=EIF4A3 PE=2 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 5.298e-23
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 ELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 159
            ELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  359 ELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411
[Close]
BLAST of FC871579 vs. ExPASy Swiss-Prot
Match: IF4A3_HUMAN (Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4)

HSP 1 Score: 107.071 bits (266), Expect = 5.298e-23
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 ELYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI 159
            ELYIHRIGRSGR+GRKGVAINFVKNDDI+ILRDIEQYYSTQIDEMPMNVADLI
Sbjct:  359 ELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411
The following BLAST results are available for this feature:
BLAST of FC871579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
RH2_ARATH4.056e-2398.11DEAD-box ATP-dependent RNA helicase 2 OS=Arabidops... [more]
IF4A3_NICPL4.056e-2398.11Eukaryotic initiation factor 4A-3 OS=Nicotiana plu... [more]
IF4A3_XENTR5.298e-2396.23Eukaryotic initiation factor 4A-III OS=Xenopus tro... [more]
IF4A3_TAEGU5.298e-2396.23Eukaryotic initiation factor 4A-III OS=Taeniopygia... [more]
IF4A3_SALSA5.298e-2396.23Eukaryotic initiation factor 4A-III OS=Salmo salar... [more]
IF4A3_RAT5.298e-2396.23Eukaryotic initiation factor 4A-III OS=Rattus norv... [more]
IF4A3_PIG5.298e-2396.23Eukaryotic initiation factor 4A-III OS=Sus scrofa ... [more]
IF4A3_MOUSE5.298e-2396.23Eukaryotic initiation factor 4A-III OS=Mus musculu... [more]
IF4A3_MACFA5.298e-2396.23Eukaryotic initiation factor 4A-III OS=Macaca fasc... [more]
IF4A3_HUMAN5.298e-2396.23Eukaryotic initiation factor 4A-III OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1BD12FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1BD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871579 ID=FC871579; Name=FC871579; organism=Citrus sinensis; type=EST; length=524bp
GAGCTTTATATTCACCGGATTGGTCGTTCTGGACGTTTTGGACGCAAGGG
TGTAGCAATAAATTTTGTCAAAAACGATGATATCAAGATTCTTAGAGATA
TCGAGCAATATTACAGTACCCAGATTGATGAAATGCCAATGAATGTTGCT
GATCTGATATAAGAGATGTTTGTGATCTCGTCTGCCAGAGTGGAGGTTAT
GGGATTGATCAATGAAAGGTTGAAGACAATTGTGTGATTGACAGTTTCTG
CAAGTGTGACATTGTCTTTGTTTTTGTGAGGAGTTTGTATAATACAGGAT
GTTCTCATATTTTCTGTATGGTATTGATGACAAGAAAAGAGAAGAGAGTA
GGCATTAACATTTGTGATAAGATTCTAGTGATTGCCTTTTGCACCTTGAC
CTGATTTTAAGGGTGGCGATTTGTTCACTGTTGAATTCAAGTTATTTTAA
CCCTTTTTGAAAGATTGTAAACACTCTGGAATATTGCTCTTTCTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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