FC871570

Overview
NameFC871570
Unique NameFC871570
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7824 contig Csv1_Contig7824:187..1017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871570 vs. ExPASy Swiss-Prot
Match: NXN_MOUSE (Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.332e-24
Identity = 83/282 (29.43%), Postives = 122/282 (43.26%), Query Frame = 3
Query:   69 DYLLNQHGTQVKVSDLEGKVTAL---YFSANWYPPCGNFTGVLVDVYEELRNNGSD-------------------FEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDA-----TLHDGVE-LIYKYGIRAFPFTXXXXXXXXXXXXXXXXRQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 830
            D L+   G +V V  L  +  AL   YF  +   PC   +  L   Y  LR + +                     E+VFVSSD+D   + ++   MPWLA+PY +   K  L  K+ +  IP L+ L     K         + D  E L + +G + F                   R+ +   L  ++          + +  SSL G  VG+YFSA WC PC      L+  Y+KIK+       A ++FE++FVS DR + SF+ YF  MPWLA+P+
Sbjct:   11 DKLVTGGGEEVDVHSLGARGIALLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGAGAGAGAAAEPEPRHRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRVSNIPSLIFLDATTGKVVCRNGLLVIRDDPEGLEFPWGPKPF-------------------REVIAGPLLRNN---------GQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE-------AGQEFEIIFVSADRSEESFKQYFSEMPWLAVPY 257          

HSP 2 Score: 111.694 bits (278), Expect = 5.196e-24
Identity = 55/132 (41.67%), Postives = 80/132 (60.61%), Query Frame = 3
Query:   75 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPF 470
            LL  +G  ++ S LEG    +YFSA+W PPC + T VLV+ Y +++  G +FE++FVS+D    +F  Y + MPWLAVPY+D   +  LNR + I+GIP L+VL P  +    T    VE++     R FP+
Sbjct:  178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQEFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEV--ITRQGRVEVLNDEDCREFPW 307          
BLAST of FC871570 vs. ExPASy Swiss-Prot
Match: NXN_HUMAN (Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 6.786e-24
Identity = 82/280 (29.29%), Postives = 121/280 (43.21%), Query Frame = 3
Query:   75 LLNQHGTQVKVSDLEGK---VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSD-------------------FEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDA-----TLHDGVE-LIYKYGIRAFPFTXXXXXXXXXXXXXXXXRQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 830
            L+   G +V V  L  +   +  LYF  +   PC   +  L   Y  LR + +                     E+VFVSSD+D   + ++   MPWLA+PY +   K  L  K+ I  IP L+ L     K         + D  E L + +G + F                   R+ +   L  ++          + +  SSL G  VG+YFSA WC PC      L+  Y+KIK+       A ++FE++FVS DR + SF+ YF  MPWLA+P+
Sbjct:   13 LVTGGGEEVDVHSLGARGISLLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGPGAGAGAAAEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRISNIPSLIFLDATTGKVVCRNGLLVIRDDPEGLEFPWGPKPF-------------------REVIAGPLLRNN---------GQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE-------AGQNFEIIFVSADRSEESFKQYFSEMPWLAVPY 257          

HSP 2 Score: 110.153 bits (274), Expect = 1.512e-23
Identity = 54/132 (40.91%), Postives = 80/132 (60.61%), Query Frame = 3
Query:   75 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPF 470
            LL  +G  ++ S LEG    +YFSA+W PPC + T VLV+ Y +++  G +FE++FVS+D    +F  Y + MPWLAVPY+D   +  LNR + I+GIP L++L P  +    T    VE++     R FP+
Sbjct:  178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEV--ITRQGRVEVLNDEDCREFPW 307          
BLAST of FC871570 vs. ExPASy Swiss-Prot
Match: NXN_BOVIN (Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.786e-24
Identity = 55/132 (41.67%), Postives = 80/132 (60.61%), Query Frame = 3
Query:   75 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPF 470
            LL  +G  ++ S LEG    +YFSA+W PPC + T VLV+ Y +++  G  FE++FVS+D   ++F  Y + MPWLAVPY+D   +  LNR + I+GIP L+VL P  +    T    VE++     R FP+
Sbjct:  178 LLRSNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEV--ITRQGRVEVLNDEDCRGFPW 307          

HSP 2 Score: 110.538 bits (275), Expect = 1.158e-23
Identity = 82/280 (29.29%), Postives = 119/280 (42.50%), Query Frame = 3
Query:   75 LLNQHGTQVKVSDLEGK---VTALYFSANWYPPCGNFTGVLVDVYEELRNNGSD-------------------FEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDA-----TLHDGVE-LIYKYGIRAFPFTXXXXXXXXXXXXXXXXRQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 830
            L+   G +V V  L  +   +  LYF  +   PC   +  L   Y  LR + +                     E+VFVSSD+D   + ++   MPWLA+PY +   K  L  K+ I  IP L+ L     K         + D  E L + +G + F                   R+ +   L   +          + +  SSL G  VG+YFSA WC PC      L+  Y+KIK+       A + FE++FVS DR + SF+ YF  MPWLA+P+
Sbjct:   13 LVTGGGEEVDVHSLAARGISLLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGPGPGAGASAEPEPRRRLEIVFVSSDQDQRQWQDFVRDMPWLALPYKEKHRKLKLWNKYRISNIPSLIFLDATSGKVVCRNGLLVIRDDPEGLEFPWGPKPF-------------------REVIAGPLLRSN---------GQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE-------AGQKFEIIFVSADRSEDSFKQYFSEMPWLAVPY 257          
BLAST of FC871570 vs. ExPASy Swiss-Prot
Match: NXN_DANRE (Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.799e-23
Identity = 76/259 (29.34%), Postives = 115/259 (44.40%), Query Frame = 3
Query:   75 LLNQHGTQVKVSDLEGKVT--ALYFSANWYPPCGNFTGVLVDVYEELRNNGSD---FEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYK--YGIRAFPFTXXXXXXXXXXXXXXXXRQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 830
            L+N    +V V  L  +++   LYF  +   PC  F   L + Y + + +       E+VF+SSD+D   + ++   M W A+P+ D   K  L  K+ +  IP LV +     K      +G+ ++     G+  FP+                 RQT  +                     ++L G  VG+YFSA WC PC      L+  Y+K+K    E G   + FE+VFVS DR + SF  YF  MPWLA+P+
Sbjct:   13 LVNGEKAEVDVQALGSRLSLLGLYFGCSLNGPCKQFNASLTEFYSKFKKSSEHKDKLEIVFISSDQDQKQWQDFLQEMQWPALPFKDRHKKMKLWNKYKVTSIPSLVFIDAATGK--VVCRNGLLVVRDDPKGLE-FPWGPKPFAEVVSGPLLRNNRQTTDS---------------------TALEGSYVGVYFSAHWCPPCRSLTRVLVESYRKVK----ETG---QKFEIVFVSADRSEESFTQYFSEMPWLAVPY 240          

HSP 2 Score: 100.138 bits (248), Expect = 1.564e-20
Identity = 47/104 (45.19%), Postives = 65/104 (62.50%), Query Frame = 3
Query:   75 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVL 386
            LL  +      + LEG    +YFSA+W PPC + T VLV+ Y +++  G  FE+VFVS+D    +F  Y + MPWLAVPYSD   +  LNR + I+GIP L++L
Sbjct:  161 LLRNNRQTTDSTALEGSYVGVYFSAHWCPPCRSLTRVLVESYRKVKETGQKFEIVFVSADRSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILL 264          
BLAST of FC871570 vs. ExPASy Swiss-Prot
Match: NXN_XENLA (Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.295e-22
Identity = 53/133 (39.85%), Postives = 77/133 (57.89%), Query Frame = 3
Query:   75 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG-VELIYKYGIRAFPF 470
            L+  +    + S LEG    +YFSA W PPC + T VLV+ Y +++ +G  FE+V VS+D    +F  Y + MPWLAVPYSD   +  LNR + I+GIP L++L P   K +     G VE++     + FP+
Sbjct:  157 LIRNNSQSQESSTLEGSYVGIYFSAYWCPPCRSLTRVLVESYRKIKESGQKFEIVLVSADRSEESFKQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPNLIILDP---KGEVITRQGRVEVLRDIDCKEFPW 286          

HSP 2 Score: 102.834 bits (255), Expect = 2.414e-21
Identity = 80/254 (31.50%), Postives = 110/254 (43.31%), Query Frame = 3
Query:   75 LLNQHGTQVKVSDLEGKVT--ALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTXXXXXXXXXXXXXXXXRQTLINLLTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 830
            L+N    +  V  L  +V+   L F      PC      L D Y + R+     E+VFVSSD D   +  +   MPWLA+PY +   K  L  KF I  IP L+ ++    K      +G+ L+ K       F                       L+ N+ +              S+L G  VG+YFSA WC PC      L+  Y+KIK    E G   + FE+V VS DR + SF+ YF  MPWLA+P+
Sbjct:   15 LVNSEREEADVQALGSRVSLIGLLFGCGMSAPCLQLLPGLKDFYCKTRDR---LEIVFVSSDPDQKKWQLFVKDMPWLALPYQEKHRKLKLWNKFRISNIPSLIFIEASTVK--TVCRNGL-LLVKDDPEGLEFPWGPKPFCEVIAGP---------LIRNNSQSQ----------ESSTLEGSYVGIYFSAYWCPPCRSLTRVLVESYRKIK----ESG---QKFEIVLVSADRSEESFKQYFSEMPWLAVPY 236          
BLAST of FC871570 vs. ExPASy Swiss-Prot
Match: TYPX_TRYBB (Tryparedoxin OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16
Identity = 44/104 (42.31%), Postives = 64/104 (61.54%), Query Frame = 3
Query:   75 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVL 386
            LL++ G +V +  L GK   LYFSA+W PPC  FT VL + YE+  +   +FEVV +S DE+ + F++Y   MPWLA+P+    T   L + F +E IP L+ +
Sbjct:   14 LLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEK-HHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITI 115          

HSP 2 Score: 82.0333 bits (201), Expect = 4.409e-15
Identity = 40/80 (50.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:  591 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 830
            +V + SLVGKTV LYFSA WC PC  F P L   Y        EK    ++FEVV +S D +++ F  Y+G MPWLALPF
Sbjct:   20 EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFY--------EKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPF 91          
The following BLAST results are available for this feature:
BLAST of FC871570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
NXN_MOUSE2.332e-2429.43Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1[more]
NXN_HUMAN6.786e-2429.29Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2[more]
NXN_BOVIN6.786e-2441.67Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1[more]
NXN_DANRE9.799e-2329.34Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1[more]
NXN_XENLA8.295e-2239.85Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1[more]
TYPX_TRYBB1.049e-1642.31Tryparedoxin OS=Trypanosoma brucei brucei PE=1 SV=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK1BC10FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1BC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871570 ID=FC871570; Name=FC871570; organism=Citrus sinensis; type=EST; length=831bp
CTATCTCTGAGCATCAGAAGATCTCAACCTCATCAAGATTTTCAAGCCTC
TTGGCCTCTAAAGATCGTGACTATCTTCTCAATCAACATGGCACTCAGGT
GAAAGTCTCTGATCTTGAAGGCAAGGTCACAGCCCTTTACTTCTCAGCTA
ACTGGTATCCGCCGTGTGGAAACTTCACCGGAGTTCTTGTTGACGTTTAC
GAAGAGCTGAGGAACAATGGATCCGATTTTGAGGTTGTCTTTGTGTCATC
TGATGAAGACTTGAATGCCTTCAACAACTACCGTGCATGCATGCCATGGC
TAGCAGTTCCATATTCGGATTTGGAAACAAAGAAGGCCTTGAACCGAAAA
TTTGACATCGAAGGCATTCCTTGCTTGGTTGTGTTGCAACCTTATGATGA
TAAAGATGATGCAACATTGCATGATGGAGTTGAGCTCATTTACAAGTATG
GGATCAGAGCTTTCCCATTTACTAAAGAGAAGCTTGAGGAATTGCAAAAG
GAAGAAAAAGAGAAGCACGAACGCCAAACTTTAATTAATTTATTAACAAA
CCACGACAGAGGCTATCTTTTGGGTCACCCTCCTGATGAAAAGGTACCCG
TATCTTCCCTGGTGGGTAAAACGGTTGGGCTTTATTTCTCAGCCAGATGG
TGCATTCCATGTGAGAAATTCATGCCTAAGTTGCTCTCCATCTACCAGAA
AATAAAGCAAAATCTGGTGGAAAAAGGAGATGCACTTGAGGATTTTGAAG
TGGTATTTGTGTCGACTGATCGTGATCAAACATCCTTCGAATCTTACTTC
GGTACAATGCCATGGCTGGCATTGCCGTTTG
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