FC871567

Overview
NameFC871567
Unique NameFC871567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13632 contig Csv1_Contig13632:100..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871567 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 5.696e-77
Identity = 130/180 (72.22%), Postives = 148/180 (82.22%), Query Frame = 1 
Query:  172 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 711
            R+VWA NLESEF+LI  +++ YPFISMDTEFPG++Y+ D+D       R+  P+  Y +LKSNVDAL+LIQVGLTLSD+ GNLPDLG   N ++IWEFNFRDFDV  D HAPDSIELLR  GIDFERNR EGV+S RFAELMMSSGL+CNESVSWVTFHSAYDFGYLVKILTRR LP  L
Sbjct:   15 RDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLD-----VLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVAL 189

HSP 2 Score: 42.3578 bits (98), Expect = 5.696e-77
Identity = 20/31 (64.52%), Postives = 23/31 (74.19%), Query Frame = 3 
Query:  720 FLTVLRVVFGNTIYDVKHIMRVC-QNLYSGL 809
            FL +LR  FG+ +YDVKHIMR C Q LY GL
Sbjct:  192 FLGLLRAFFGDRVYDVKHIMRFCEQRLYGGL 222
[Close]
BLAST of FC871567 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 8.114e-76
Identity = 133/180 (73.89%), Postives = 148/180 (82.22%), Query Frame = 1 
Query:  172 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGL 711
            REVWA NLESEFELIS++ID YPFISMDTEFPG++++ D+        R   P D Y +LK+NVDAL+LIQVGLTLSD +GNLPDLG   +  FIWEFNFRDFDVA DAHAPDSIELLR QGIDFERN  +GV+S RFAELMMSSGLVCNE VSWVTFHSAYDFGYL+KILTRR LP  L
Sbjct:   20 REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDL--------RFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGAL 191

HSP 2 Score: 37.7354 bits (86), Expect = 8.114e-76
Identity = 16/31 (51.61%), Postives = 23/31 (74.19%), Query Frame = 3 
Query:  720 FLTVLRVVFGNTIYDVKHIMRVCQ-NLYSGL 809
            F  V+RV+FG  +YDVKH+M+ C+  L+ GL
Sbjct:  194 FKRVMRVLFGERVYDVKHMMKFCERRLFGGL 224
[Close]
BLAST of FC871567 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 3.210e-56
Identity = 103/178 (57.87%), Postives = 132/178 (74.16%), Query Frame = 1 
Query:  172 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLP 702
            REVW  NLESE  LI +V+D +PF++MDTEFPG+V RP     T   +       HY+ LK+NV+ L +IQ+GLT SD  GNLP  G+  +NK+ IW+FNFR+FD+ +D +A DSIELLR  GIDF +N E G+DS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT ++LP
Sbjct:   13 REVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY-------HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGT--DNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 181

HSP 2 Score: 33.113 bits (74), Expect = 3.210e-56
Identity = 13/33 (39.39%), Postives = 22/33 (66.67%), Query Frame = 3 
Query:  711 RTSFLTVLRVVFGNTIYDVKHIMRVCQNLYSGL 809
            +T F  ++ V F   +YD+KH+M+ C +L+ GL
Sbjct:  184 QTGFFEMISVYFPR-VYDIKHLMKFCNSLHGGL 215
[Close]
BLAST of FC871567 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 9.146e-53
Identity = 99/178 (55.62%), Postives = 130/178 (73.03%), Query Frame = 1 
Query:  172 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLP 702
            REVW  NL  EF LI +++D++ +I+MDTEFPG+V +P    +T  Y        +Y+ LK NVD L LIQVGLT SD +GNLP  G+   +KF IW+FNFR+F++  D +A +SIELLR  GIDF++N E+G+D VRF ELMMSSG+V N+++SWVTFH  YDFGYLVK+LT + LP
Sbjct:   13 REVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKP---VATFKYNNDL----NYRTLKENVDLLKLIQVGLTFSDENGNLPTCGT---DKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELP 180

HSP 2 Score: 32.3426 bits (72), Expect = 9.146e-53
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 3 
Query:  711 RTSFLTVLRVVFGNTIYDVKHIMRVCQNLYSGL 809
            +  F  +L V F  T+YD+KH+M  C  L+ GL
Sbjct:  183 QADFFKLLYVYFP-TVYDIKHLMTFCNGLFGGL 214
[Close]
BLAST of FC871567 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.641e-52
Identity = 95/178 (53.37%), Postives = 126/178 (70.79%), Query Frame = 1 
Query:  172 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLP 702
            REVW  NL+ E +LI  V+D +P+++MDTEFPG+V RP     S   Y        HY+ LK+NV+ L +IQ+GLT S+  GNLP  G+  +   IW+FNFR+FD+ +D  A DSIELL+  GID  +N  +G+DS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT ++LP
Sbjct:   13 REVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY--------HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGT--DKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180

HSP 2 Score: 35.4242 bits (80), Expect = 2.641e-52
Identity = 14/33 (42.42%), Postives = 23/33 (69.70%), Query Frame = 3 
Query:  711 RTSFLTVLRVVFGNTIYDVKHIMRVCQNLYSGL 809
            +T F  ++ V F  T+YD+KH+M+ C +L+ GL
Sbjct:  183 QTDFFKLINVYFP-TVYDIKHLMKFCNSLHGGL 214
[Close]
BLAST of FC871567 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.739e-51
Identity = 99/194 (51.03%), Postives = 131/194 (67.53%), Query Frame = 1 
Query:  172 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLERVF*RSSGWFSV 750
            REVW  NLE E  LI Q ID +P+++MDTEFPG+V +    +P+  PY    + +  Y  LK+NV+ L LIQ+GLTLSD  GNLP  G+  N + IW+FNFR+F+V +D  A DSIELLR   ID E+N E GVD+ RFAEL+M SG+V N+ + WVTFH  YDFGYL+K+L+ + LP  +   F +   +F V
Sbjct:   17 REVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYN--YDTLKANVNMLKLIQLGLTLSDEKGNLPTCGT--NKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISDFFDQMEKFFPV 206

HSP 2 Score: 30.0314 bits (66), Expect = 3.739e-51
Identity = 11/22 (50.00%), Postives = 15/22 (68.18%), Query Frame = 3 
Query:  744 FGNTIYDVKHIMRVCQNLYSGL 809
            F   +YD+K++M  C NLY GL
Sbjct:  203 FFPVVYDIKYLMGFCTNLYGGL 224
[Close]
BLAST of FC871567 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.321e-41
Identity = 83/177 (46.89%), Postives = 116/177 (65.54%), Query Frame = 1 
Query:  175 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLP 702
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLP 175

HSP 2 Score: 32.3426 bits (72), Expect = 1.321e-41
Identity = 15/30 (50.00%), Postives = 21/30 (70.00%), Query Frame = 3 
Query:  720 FLTVLRVVFGNTIYDVKHIMRVCQNLYSGL 809
            F  +LR+ F   IYDVK++M+ C+NL  GL
Sbjct:  181 FFEILRLFFP-VIYDVKYLMKSCKNLKGGL 209
[Close]
BLAST of FC871567 vs. ExPASy Swiss-Prot
Match: CNOT7_HUMAN (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 1.321e-41
Identity = 83/177 (46.89%), Postives = 116/177 (65.54%), Query Frame = 1 
Query:  175 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLP 702
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLP 175

HSP 2 Score: 32.3426 bits (72), Expect = 1.321e-41
Identity = 15/30 (50.00%), Postives = 21/30 (70.00%), Query Frame = 3 
Query:  720 FLTVLRVVFGNTIYDVKHIMRVCQNLYSGL 809
            F  +LR+ F   IYDVK++M+ C+NL  GL
Sbjct:  181 FFEILRLFFP-VIYDVKYLMKSCKNLKGGL 209
[Close]
BLAST of FC871567 vs. ExPASy Swiss-Prot
Match: CNOT7_CHICK (CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.321e-41
Identity = 83/177 (46.89%), Postives = 116/177 (65.54%), Query Frame = 1 
Query:  175 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLP 702
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLP 175

HSP 2 Score: 32.3426 bits (72), Expect = 1.321e-41
Identity = 15/30 (50.00%), Postives = 21/30 (70.00%), Query Frame = 3 
Query:  720 FLTVLRVVFGNTIYDVKHIMRVCQNLYSGL 809
            F  +LR+ F   IYDVK++M+ C+NL  GL
Sbjct:  181 FFEILRLFFP-VIYDVKYLMKSCKNLKGGL 209
[Close]
BLAST of FC871567 vs. ExPASy Swiss-Prot
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.321e-41
Identity = 83/177 (46.89%), Postives = 116/177 (65.54%), Query Frame = 1 
Query:  175 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLP 702
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLP 175

HSP 2 Score: 32.3426 bits (72), Expect = 1.321e-41
Identity = 15/30 (50.00%), Postives = 21/30 (70.00%), Query Frame = 3 
Query:  720 FLTVLRVVFGNTIYDVKHIMRVCQNLYSGL 809
            F  +LR+ F   IYDVK++M+ C+NL  GL
Sbjct:  181 FFEILRLFFP-VIYDVKYLMKSCKNLKGGL 209
The following BLAST results are available for this feature:
BLAST of FC871567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1K_ARATH5.696e-7772.22Probable CCR4-associated factor 1 homolog 11 OS=Ar... [more]
CAF1I_ARATH8.114e-7673.89Probable CCR4-associated factor 1 homolog 9 OS=Ara... [more]
CAF1G_ARATH3.210e-5657.87Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1J_ARATH9.146e-5355.62Probable CCR4-associated factor 1 homolog 10 OS=Ar... [more]
CAF1F_ARATH2.641e-5253.37Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1B_ARATH3.739e-5151.03Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
CNOT7_MOUSE1.321e-4146.89CCR4-NOT transcription complex subunit 7 OS=Mus mu... [more]
CNOT7_HUMAN1.321e-4146.89CCR4-NOT transcription complex subunit 7 OS=Homo s... [more]
CNOT7_CHICK1.321e-4146.89CCR4-NOT transcription complex subunit 7 OS=Gallus... [more]
CNOT7_BOVIN1.321e-4146.89CCR4-NOT transcription complex subunit 7 OS=Bos ta... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1BC04FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1BC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871567 ID=FC871567; Name=FC871567; organism=Citrus sinensis; type=EST; length=811bp
ACTCTCTTTAATTTTGGCCTACTATCTTCATTTGATACTTTCAAATCTCA
CTTGCGAAGCGTCGAGCTGCAAGCTATTAGCTGACGATCATCACTCATCA
TGGGAGCTGGAGATTTTTCTACGGATTTAGATTCAAGCTCAAATTCCAGC
TCATCGAATTCGATTATAATACGCGAAGTCTGGGCGTCTAATTTGGAATC
CGAATTCGAACTCATCAGCCAAGTCATCGATCGGTACCCTTTTATTTCCA
TGGACACCGAATTCCCCGGTCTTGTCTACCGACCCGATGTGGACCCCTCC
ACCAGGCCTTACTTCCGTCAACGCAAGCCGTCCGATCACTACAAGGTTTT
GAAATCCAACGTCGACGCCTTGAACTTGATCCAGGTGGGCCTCACTCTCT
CTGACTCCTCCGGTAACTTGCCGGATTTGGGCTCCGGGGGCAACAATAAA
TTCATCTGGGAGTTCAACTTCCGGGACTTCGATGTCGCGACTGACGCCCA
CGCGCCGGATTCGATAGAGCTTCTGAGACTGCAGGGGATTGACTTTGAGC
GCAACAGGGAGGAAGGCGTTGACTCGGTTCGGTTCGCCGAGTTGATGATG
TCGTCGGGACTCGTCTGTAACGAGTCGGTGAGTTGGGTCACGTTCCACAG
CGCGTACGATTTCGGGTACCTGGTTAAGATCCTCACGCGCCGGAGCTTGC
CCAGTGGCCTAGAACGAGTTTTTTGACGGTCCTCAGGGTGGTTTTCGGTA
ACACCATTTATGACGTCAAACACATTATGCGGGTCTGTCAGAACTTGTAC
AGTGGGCTGGA
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