FC871526

Overview
NameFC871526
Unique NameFC871526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13484 contig Csv1_Contig13484:563..1057. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871526 vs. ExPASy Swiss-Prot
Match: PSY_CUCME (Phytoene synthase, chloroplastic OS=Cucumis melo GN=PSY PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.343e-35
Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 3
Query:    3 WRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRPS 251
            WRNFMKNQIKRARMFFD AE GV EL++ASRWPVWASLLLYRQILDEIEANDY+NFTKRAYVSKAKKI ALP+AY ++LL PS
Sbjct:  340 WRNFMKNQIKRARMFFDEAEKGVLELNKASRWPVWASLLLYRQILDEIEANDYDNFTKRAYVSKAKKILALPMAYGRALLGPS 422          
BLAST of FC871526 vs. ExPASy Swiss-Prot
Match: PSY_ARATH (Phytoene synthase, chloroplastic OS=Arabidopsis thaliana GN=PSY1 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 3.060e-35
Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = 3
Query:    3 WRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRPS 251
            WRNFMK Q+KRARMFFD AE GVTELS ASRWPVWASLLLYR+ILDEIEANDYNNFTKRAYV K KKIAALP+AYAKS+L+ S
Sbjct:  334 WRNFMKMQLKRARMFFDEAEKGVTELSAASRWPVWASLLLYRRILDEIEANDYNNFTKRAYVGKVKKIAALPLAYAKSVLKTS 416          
BLAST of FC871526 vs. ExPASy Swiss-Prot
Match: PSY_NARPS (Phytoene synthase, chloroplastic OS=Narcissus pseudonarcissus GN=PSY PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.163e-34
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 3
Query:    3 WRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRP 248
            WR+FMK QIKRAR FF+ AE GVTELS+ASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSK K++AALP+AY KSLL P
Sbjct:  331 WRSFMKRQIKRARTFFEQAEKGVTELSQASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKVKRLAALPLAYGKSLLIP 412          
BLAST of FC871526 vs. ExPASy Swiss-Prot
Match: PSY_MAIZE (Phytoene synthase, chloroplastic OS=Zea mays GN=Y1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.163e-34
Identity = 69/82 (84.15%), Postives = 73/82 (89.02%), Query Frame = 3
Query:    3 WRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRP 248
            WRNFMK QIKRARMFF+ AE GV ELS+ASRWPVWASLLLYRQILDEIEANDYNNFTKRAYV K KK+ ALP+AY KSLL P
Sbjct:  321 WRNFMKRQIKRARMFFEEAERGVNELSQASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVGKGKKLLALPVAYGKSLLLP 402          
BLAST of FC871526 vs. ExPASy Swiss-Prot
Match: PSY_DAUCA (Phytoene synthase, chloroplastic OS=Daucus carota GN=PSY PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.421e-32
Identity = 64/85 (75.29%), Postives = 74/85 (87.06%), Query Frame = 3
Query:    3 WRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRPSRI 257
            WR+FMK QIKRARMFFD AE GV ELS ASRWPVWASLLLY+QILD IEANDY+NFTKRAYV KAKK+ +LP+AY+++L  PS +
Sbjct:  313 WRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAYSRALFAPSTV 397          
BLAST of FC871526 vs. ExPASy Swiss-Prot
Match: PSY1_SOLLC (Phytoene synthase 1, chloroplastic OS=Solanum lycopersicum GN=PSY1 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 3.166e-32
Identity = 67/84 (79.76%), Postives = 75/84 (89.29%), Query Frame = 3
Query:    3 WRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRPSR 254
            WR FMK QI RAR FFD AE GVTELS ASR+PVWASL+LYR+ILDEIEANDYNNFTKRAYVSK+KK+ ALPIAYAKSL+ P++
Sbjct:  323 WRIFMKKQIHRARKFFDEAEKGVTELSSASRFPVWASLVLYRKILDEIEANDYNNFTKRAYVSKSKKLIALPIAYAKSLVPPTK 406          
BLAST of FC871526 vs. ExPASy Swiss-Prot
Match: PSY_CAPAN (Phytoene synthase, chloroplastic OS=Capsicum annuum GN=PSY1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.571e-31
Identity = 68/84 (80.95%), Postives = 73/84 (86.90%), Query Frame = 3
Query:    3 WRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRPSR 254
            WR FMK QI+RAR FFD AE GVTELS ASRWPV ASLLLYR+ILDEIEANDYNNFTKRAYVSK KK+ ALPIAYAKSL+  +R
Sbjct:  335 WRIFMKKQIQRARKFFDEAEKGVTELSAASRWPVLASLLLYRRILDEIEANDYNNFTKRAYVSKPKKLIALPIAYAKSLVPSTR 418          
BLAST of FC871526 vs. ExPASy Swiss-Prot
Match: PSY2_SOLLC (Phytoene synthase 2, chloroplastic (Fragment) OS=Solanum lycopersicum GN=PSY2 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.019e-30
Identity = 65/82 (79.27%), Postives = 71/82 (86.59%), Query Frame = 3
Query:    3 WRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRP 248
            WR FMK QI+RAR FFD AE GVTELS ASRWPV ASLLLYR+ILDEIEANDYNNFT+RAYVSK KK+  LPIAYA+SL+ P
Sbjct:  219 WRIFMKKQIQRARKFFDEAEKGVTELSSASRWPVLASLLLYRKILDEIEANDYNNFTRRAYVSKPKKLLTLPIAYARSLVPP 300          
BLAST of FC871526 vs. ExPASy Swiss-Prot
Match: CRTB_SYNE7 (Phytoene synthase OS=Synechococcus elongatus (strain PCC 7942) GN=crtB PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 3.074e-19
Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 3
Query:    3 WRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKS 236
            WR FM+ Q+ RAR +F+ AE G+ +LS  +RWPVWASL+LYR+ILD IE N+Y+ F KRAYV   +K+ +LP+A  ++
Sbjct:  228 WRAFMQFQLDRARDYFEQAERGIRQLSHDARWPVWASLMLYREILDVIEQNNYDVFRKRAYVPTWRKLCSLPVAMLRA 305          
BLAST of FC871526 vs. ExPASy Swiss-Prot
Match: CRTY_SPIPL (Phytoene synthase OS=Spirulina platensis GN=crtB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.399e-18
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 3
Query:    3 WRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKS 236
            WR  M+ QI+RAR F+ +AE G+  L    RWPVW +L+LYRQILDEIE N+Y+ F +RAYV   KK+  LP+A  ++
Sbjct:  229 WRELMRFQIQRARKFYTLAEEGIAALHPDIRWPVWTALMLYRQILDEIERNEYDVFNQRAYVPTWKKMMCLPLAQLRA 306          
The following BLAST results are available for this feature:
BLAST of FC871526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PSY_CUCME2.343e-3585.54Phytoene synthase, chloroplastic OS=Cucumis melo G... [more]
PSY_ARATH3.060e-3585.54Phytoene synthase, chloroplastic OS=Arabidopsis th... [more]
PSY_NARPS1.163e-3484.15Phytoene synthase, chloroplastic OS=Narcissus pseu... [more]
PSY_MAIZE1.163e-3484.15Phytoene synthase, chloroplastic OS=Zea mays GN=Y1... [more]
PSY_DAUCA1.421e-3275.29Phytoene synthase, chloroplastic OS=Daucus carota ... [more]
PSY1_SOLLC3.166e-3279.76Phytoene synthase 1, chloroplastic OS=Solanum lyco... [more]
PSY_CAPAN1.571e-3180.95Phytoene synthase, chloroplastic OS=Capsicum annuu... [more]
PSY2_SOLLC1.019e-3079.27Phytoene synthase 2, chloroplastic (Fragment) OS=S... [more]
CRTB_SYNE73.074e-1953.85Phytoene synthase OS=Synechococcus elongatus (stra... [more]
CRTY_SPIPL3.399e-1852.56Phytoene synthase OS=Spirulina platensis GN=crtB P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AH09FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1AH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871526 ID=FC871526; Name=FC871526; organism=Citrus sinensis; type=EST; length=495bp
AATGGAGAAACTTCATGAAGAACCAAATTAAGAGGGCAAGGATGTTCTTT
GATATGGCTGAGAACGGTGTGACCGAGCTGAGTGAAGCTAGTAGATGGCC
GGTATGGGCTTCATTGCTGTTGTACCGGCAAATACTGGATGAGATTGAGG
CCAATGATTACAACAACTTCACAAAGAGAGCTTATGTGAGTAAAGCCAAG
AAGATAGCTGCACTACCAATTGCATATGCAAAATCCCTCTTACGCCCGTC
AAGAATATATACCAGTAAGGCTTAAACTGAACATTTAACATCAAAGTTTA
GAAGCATATATAGTTGAAACGGATTCAAAGTGGAAACAAAAATGAAAATG
ATTGCTTGGATATTAGGAATTGTTGGTATGCAGCATGTATTTGATGGTAA
AGTTAGAATAGTGAATCCAATTCACAATCCAAGGCCGGTGCCCTATTCAA
TATTGTAGATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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