FC871524

Overview
NameFC871524
Unique NameFC871524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length954
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC871524_ssr879 microsatellite FC871524_ssr879:879..890. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4196 contig Csv1_Contig4196:428..1381. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: WDR26_HUMAN (WD repeat-containing protein 26 OS=Homo sapiens GN=WDR26 PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 2.959e-37
Identity = 87/217 (40.09%), Postives = 123/217 (56.68%), Query Frame = 2
Query:    8 WDVSSGNC-LHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYI-EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 652
            W+V +G     + +     L S  W+PD K   +G         +L G  L+ W+G R   +  L   SDGK ++       +   + E   +R I +ED  I SF++S++ +  L+N+  Q +HLW+++  V LV KY+G  +  + I SCFGG  + FIASGSED +VYIWH+ S   I  L GH+  VNCVSWNP  P M+ASASDD T+RIWG
Sbjct:  430 WNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQRGQFYQCDLDGNLLDSWEGVR---VQCLWCLSDGKTVLASDTHQRIRGYNFEDLTDRNIVQEDHPIMSFTISKNGRLALLNVATQGVHLWDLQDRV-LVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIAELTGHTRTVNCVSWNPQIPSMMASASDDGTVRIWG 642          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: WDR26_XENTR (WD repeat-containing protein 26 OS=Xenopus tropicalis GN=wdr26 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 3.865e-37
Identity = 86/217 (39.63%), Postives = 123/217 (56.68%), Query Frame = 2
Query:    8 WDVSSGNC-LHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYI-EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 652
            W+V +G     + +     L S  W+PD K   +G         +L G  L+ W+G R   +  L   SDGK ++       +   + E   +R I +ED  I SF++SR+ +  L+N+  Q +HLW+++  V LV KY+G  +  + I SCFGG  + FIASGSED +VY+WH+ S   I  L GH+  VNCVSWNP  P ++ASASDD T+RIWG
Sbjct:  383 WNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQRGQFYQCDLDGNLLDSWEGVR---VQCLWCLSDGKTVLASDTHQRIRGYNFEDLTDRNIVQEDHPIMSFTISRNGRLALLNVATQGVHLWDLQDRV-LVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYVWHKRSELPIAELTGHTRTVNCVSWNPQIPSLMASASDDGTVRIWG 595          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: WDR26_MOUSE (WD repeat-containing protein 26 OS=Mus musculus GN=Wdr26 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 3.865e-37
Identity = 87/217 (40.09%), Postives = 123/217 (56.68%), Query Frame = 2
Query:    8 WDVSSGNC-LHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYI-EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 652
            W+V +G     + +     L S  W+PD K   +G         +L G  L+ W+G R   +  L   SDGK ++       +   + E   +R I +ED  I SF++S++ +  L+N+  Q +HLW+++  V LV KY+G  +  + I SCFGG  + FIASGSED +VYIWH+ S   I  L GH+  VNCVSWNP  P M+ASASDD T+RIWG
Sbjct:  410 WNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQRGQFYQCDLDGNLLDSWEGVR---VQCLWCLSDGKTVLASDTHQRVRGYNFEDLTDRNIVQEDHPIMSFTISKNGRLALLNVATQGVHLWDLQDRV-LVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIAELTGHTRTVNCVSWNPQIPSMMASASDDGTVRIWG 622          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: YIPC_SCHPO (Uncharacterized WD repeat-containing protein C343.04c OS=Schizosaccharomyces pombe GN=SPAC343.04c PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.272e-36
Identity = 85/226 (37.61%), Postives = 121/226 (53.54%), Query Frame = 2
Query:    8 WDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVE--------RYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 661
            WD  +G  L  Y K G  +  C W PD     +G+ D  I  W L G+ L  W+    + I D+ +TSDG ++  +  E  +   D+   +         + I     +TS  LS+D+K+ L NL      LW++E E ++V +Y GHK   F+I SCFGG +  F+ SGSED ++ IWHR S  L+  L GH   VN V++NP +P+  ASA DD T+RIW  KD
Sbjct:  282 WDAFTGEKLRDY-KHGFSVSCCCWLPDGLSFITGSPDCHITHWSLNGEILYKWED---VNIYDMALTSDGTKLYIVGFEQLINAEDKHIAIYSVETRECIKKISLQSKVTSICLSKDSKYALTNLEPHTTFLWDLE-ENRIVRQYMGHKLGNFLIGSCFGGKDDTFVLSGSEDDKIRIWHRESGKLLATLSGHVKCVNYVAYNPVDPYQFASAGDDNTVRIWSNKD 502          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: WDR26_DANRE (WD repeat-containing protein 26 OS=Danio rerio GN=wdr26 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.581e-36
Identity = 85/217 (39.17%), Postives = 121/217 (55.76%), Query Frame = 2
Query:    8 WDVSSGNC-LHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERYI-EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 652
            W+V +G     + +     L S  W+PD K   +G         +L G  LE W+G R   +  L    DG+ ++       +     E   +R I +ED  I SF++S++ +  L+N+  Q +HLW+++  V LV KY+G  +  + I SCFGG  + FIASGSED +VYIWH+ S   I  L GH+  VNCVSWNP  P ++ASASDD T+RIWG
Sbjct:  342 WNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQRGQFYQCDLDGNLLESWEGVR---VQCLWCMGDGRTVLASDTHQRIRGYSFEDLTDRNIVQEDHPIMSFTVSKNGRLALLNVATQGVHLWDLQDRV-LVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIVELTGHTRTVNCVSWNPCIPSLMASASDDGTVRIWG 554          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: WDR26_DROME (WD repeat-containing protein 26 homolog OS=Drosophila melanogaster GN=CG7611 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.592e-33
Identity = 79/236 (33.47%), Postives = 130/236 (55.08%), Query Frame = 2
Query:    8 WDVSSGNCLHVYEKAGLGLVSCG-WHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDGKQIITMCKESALLLLDREAKVERY--IEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK----DLNVKRKDCHSN 694
            W+V  G  +  + ++    ++CG +  D      G     + + +L G  ++ W+G R   ++ +   +D K I+       +   + ++    +  + E   I +FS++  ++  L+N+ NQ +HLW+IE +  LV +++G ++S F I SCFGG+ ++F+ASGSED  VYIWH    + +  L GH+  VNCVSWNP  P +LASASDD T+RIWG K        +  DC S+
Sbjct:  390 WNVDDGKLVVKFSQSLEDSLACGAFSRDGARFVCGGQKGQLYLCDLNGTIVDSWEGVR---VNSIAFRADNKTILAADNHYRIRGYNFDSPRSDFDILREPHPIMTFSINSADRLALLNVSNQGLHLWDIEDKC-LVRRFQGIRQSNFAIHSCFGGVNESFVASGSEDKVVYIWHIKREEPLAKLAGHTKTVNCVSWNPVYPSLLASASDDATVRIWGPKPNGSSATTESDDCSSS 621          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: WDR5_RAT (WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.096e-19
Identity = 63/221 (28.51%), Postives = 115/221 (52.04%), Query Frame = 2
Query:    8 WDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDRTIRIW 649
            WDVSSG CL   +     +  C ++P    I SG+ D+S+ +W++  K  +C K     +  +S +    DG  I++   +    + D  +   ++  I++D    SF   S + K++L   L+  + LW+   + K +  Y GHK  ++ I + F      +I SGSED+ VYIW+  + +++  L GH+  V   + +P   +++ASA+  +D+TI++W
Sbjct:  114 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 330          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.096e-19
Identity = 63/221 (28.51%), Postives = 115/221 (52.04%), Query Frame = 2
Query:    8 WDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDRTIRIW 649
            WDVSSG CL   +     +  C ++P    I SG+ D+S+ +W++  K  +C K     +  +S +    DG  I++   +    + D  +   ++  I++D    SF   S + K++L   L+  + LW+   + K +  Y GHK  ++ I + F      +I SGSED+ VYIW+  + +++  L GH+  V   + +P   +++ASA+  +D+TI++W
Sbjct:  114 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 330          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.096e-19
Identity = 63/221 (28.51%), Postives = 115/221 (52.04%), Query Frame = 2
Query:    8 WDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDRTIRIW 649
            WDVSSG CL   +     +  C ++P    I SG+ D+S+ +W++  K  +C K     +  +S +    DG  I++   +    + D  +   ++  I++D    SF   S + K++L   L+  + LW+   + K +  Y GHK  ++ I + F      +I SGSED+ VYIW+  + +++  L GH+  V   + +P   +++ASA+  +D+TI++W
Sbjct:  114 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 330          
BLAST of FC871524 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.096e-19
Identity = 63/221 (28.51%), Postives = 115/221 (52.04%), Query Frame = 2
Query:    8 WDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKG--QRTLKISDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDRTIRIW 649
            WDVSSG CL   +     +  C ++P    I SG+ D+S+ +W++  K  +C K     +  +S +    DG  I++   +    + D  +   ++  I++D    SF   S + K++L   L+  + LW+   + K +  Y GHK  ++ I + F      +I SGSED+ VYIW+  + +++  L GH+  V   + +P   +++ASA+  +D+TI++W
Sbjct:  114 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 330          
The following BLAST results are available for this feature:
BLAST of FC871524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
WDR26_HUMAN2.959e-3740.09WD repeat-containing protein 26 OS=Homo sapiens GN... [more]
WDR26_XENTR3.865e-3739.63WD repeat-containing protein 26 OS=Xenopus tropica... [more]
WDR26_MOUSE3.865e-3740.09WD repeat-containing protein 26 OS=Mus musculus GN... [more]
YIPC_SCHPO3.272e-3637.61Uncharacterized WD repeat-containing protein C343.... [more]
WDR26_DANRE5.581e-3639.17WD repeat-containing protein 26 OS=Danio rerio GN=... [more]
WDR26_DROME2.592e-3333.47WD repeat-containing protein 26 homolog OS=Drosoph... [more]
WDR5_RAT8.096e-1928.51WD repeat-containing protein 5 OS=Rattus norvegicu... [more]
WDR5_MOUSE8.096e-1928.51WD repeat-containing protein 5 OS=Mus musculus GN=... [more]
WDR5_HUMAN8.096e-1928.51WD repeat-containing protein 5 OS=Homo sapiens GN=... [more]
WDR5_BOVIN8.096e-1928.51WD repeat-containing protein 5 OS=Bos taurus GN=WD... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AH05FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1AH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871524 ID=FC871524; Name=FC871524; organism=Citrus sinensis; type=EST; length=954bp
TAGGCGCTGGGATGTGTCTTCTGGCAATTGTCTCCATGTTTATGAAAAAG
CTGGCCTTGGCCTGGTGTCTTGTGGATGGCATCCAGACAGAAAATGGATA
TTTTCTGGTGCCAATGATAAGAGTATCTGCATGTGGGAACTAGGTGGAAA
AGAGCTAGAGTGTTGGAAAGGCCAACGAACTTTAAAGATTTCTGATTTGG
AAGTAACAAGTGATGGGAAGCAGATTATAACTATGTGTAAAGAATCTGCC
CTACTATTATTGGACAGAGAAGCAAAAGTTGAGAGGTACATTGAAGAGGA
TCAAACAATAACATCATTCTCATTATCTAGAGACAACAAATTCTTGCTGG
TGAATCTTCTGAACCAAGAAATCCATCTTTGGAACATAGAGGGTGAAGTC
AAGCTGGTTGCCAAGTACAAAGGTCATAAACGTAGTCGTTTTGTTATTAG
GTCTTGTTTTGGTGGGCTTGAGCAAGCTTTTATTGCCAGTGGGAGTGAGG
ATTCACAGGTTTATATATGGCATAGAGCCTCATGTGACCTCATTGGGGCA
TTACCAGGTCATTCTGGAGCTGTTAACTGTGTGAGCTGGAATCCAGCAAA
TCCTCACATGTTGGCATCAGCCAGTGATGACCGTACTATTCGGATATGGG
GCTTGAAAGATCTAAATGTGAAGCGGAAGGATTGTCACAGCAATGGCGTC
CACTATTGCAATGGAGGAACTTGAAACCAAAAGAGTAGAATCTTCATCGC
TTAATTCCTTGACCATTGCTTTTCTGTAAATACTTCATTTTCATTTCAAG
CCGACATTCATATCAAACAAGTTTGTGAACGGAAGCATCCTTCTCATAAT
AAATCTGCGCCTTCTCATTTAATTCAAATAATTAATTAATTATGATAAAA
AGGGTTTTAAAGACAAATTTGAAACTTGACTGGTGCAGCTTAAAAAACAT
GGGG
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