FC871481
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC871481 vs. ExPASy Swiss-Prot
Match: PP153_ARATH (Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2) HSP 1 Score: 162.54 bits (410), Expect = 8.240e-40 Identity = 73/87 (83.91%), Postives = 80/87 (91.95%), Query Frame = 3 Query: 3 RYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263 R+VLHDID+EAKE+AL YHSERLAIAYG+I TPPR L IIKNLR+CGDCHN IKIMSKI+GR LIVRDNKRFHHF+DGKCSCGDYW Sbjct: 493 RFVLHDIDQEAKEQALLYHSERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIVRDNKRFHHFKDGKCSCGDYW 579
BLAST of FC871481 vs. ExPASy Swiss-Prot
Match: PPR74_ARATH (Pentatricopeptide repeat-containing protein At1g47580, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H50 PE=2 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 1.718e-37 Identity = 68/87 (78.16%), Postives = 78/87 (89.66%), Query Frame = 3 Query: 3 RYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263 +YVLHDIDEEAKEKAL +HSERLAIA+G+I+TPP +R++KNLRICGDCHN IKI+S I RE+IVRDNKRFHHFRDG CSCGDYW Sbjct: 153 KYVLHDIDEEAKEKALMHHSERLAIAFGIINTPPGTTIRVMKNLRICGDCHNFIKILSSIEDREIIVRDNKRFHHFRDGNCSCGDYW 239
BLAST of FC871481 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 6.324e-32 Identity = 59/85 (69.41%), Postives = 73/85 (85.88%), Query Frame = 3 Query: 9 VLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263 VLHD++EE KE+ L++HSE+LAIA+GLISTP + LRI+KNLR+C DCH AIK +SK+VGRE+IVRD RFHHF+DG CSC DYW Sbjct: 702 VLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
BLAST of FC871481 vs. ExPASy Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 1.409e-31 Identity = 54/86 (62.79%), Postives = 73/86 (84.88%), Query Frame = 3 Query: 6 YVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263 + L D++EE KE+AL YHSE+LA+A+GL+STPP P+R+IKNLR+CGDCHNA+K ++K+ RE+++RD RFH F+DG CSCGDYW Sbjct: 905 FTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
BLAST of FC871481 vs. ExPASy Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 1.840e-31 Identity = 55/85 (64.71%), Postives = 71/85 (83.53%), Query Frame = 3 Query: 9 VLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263 VLHD++EE KE+ ++YHSERLA+AYG++ P+R+IKNLR+C DCHNAIK M++I GR +I+RDN RFHHF+DG CSCGDYW Sbjct: 697 VLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
BLAST of FC871481 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 4.532e-30 Identity = 54/85 (63.53%), Postives = 69/85 (81.18%), Query Frame = 3 Query: 9 VLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263 V HD+DEE KE L+ HSE+LAIA+G+++T P + ++KNLR+C DCHN IK++SKIV RE +VRD KRFHHF+DG CSCGDYW Sbjct: 575 VCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
BLAST of FC871481 vs. ExPASy Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 5.919e-30 Identity = 55/85 (64.71%), Postives = 68/85 (80.00%), Query Frame = 3 Query: 9 VLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263 VL D++E KE++LQ HSERLAIAYGLIST P PL+I KNLR+C DCH K++SKI GR++++RD RFHHF DG CSCGD+W Sbjct: 548 VLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
BLAST of FC871481 vs. ExPASy Swiss-Prot
Match: PPR84_ARATH (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.722e-29 Identity = 53/86 (61.63%), Postives = 70/86 (81.40%), Query Frame = 3 Query: 6 YVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263 +VLHD+DEE K +L HSERLA+AYGL+ P +P+R++KNLR+CGDCH AIK++SK+ RE+I+RD RFHHF +G+CSC DYW Sbjct: 619 HVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704
BLAST of FC871481 vs. ExPASy Swiss-Prot
Match: PPR25_ARATH (Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2) HSP 1 Score: 127.872 bits (320), Expect = 2.249e-29 Identity = 53/86 (61.63%), Postives = 69/86 (80.23%), Query Frame = 3 Query: 6 YVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263 Y LHD+DEE K +L+YHSERLA+AY L+ +P+R++KNLR+C DCH AIKI+SK+ RE+I+RD RFHHFR+G+CSC DYW Sbjct: 620 YALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705
BLAST of FC871481 vs. ExPASy Swiss-Prot
Match: PP429_ARATH (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 3.837e-29 Identity = 54/86 (62.79%), Postives = 67/86 (77.91%), Query Frame = 3 Query: 6 YVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263 YVL ++D + K + ++YHSERLAIA+GLI+ P P+R++KNLR+CGDCHNAIK MS R +IVRDN RFH F DGKCSC DYW Sbjct: 503 YVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSCNDYW 588 The following BLAST results are available for this feature:
BLAST of FC871481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 87
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871481 ID=FC871481; Name=FC871481; organism=Citrus sinensis; type=EST; length=473bpback to top |