FC871479

Overview
NameFC871479
Unique NameFC871479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length402
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1878 contig Csv1_Contig1878:719..1120. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871479 vs. ExPASy Swiss-Prot
Match: IF2B_MALDO (Eukaryotic translation initiation factor 2 subunit beta OS=Malus domestica PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.249e-34
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 2
Query:    2 VVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFQARVGRRNAG 217
            VVKGRFAPKNFEGILRRYVNEYVICLGC+SPDTILSKENRLFFLRCEKCGSGRSVAP KAGF ARVGRRNAG
Sbjct:  199 VVKGRFAPKNFEGILRRYVNEYVICLGCQSPDTILSKENRLFFLRCEKCGSGRSVAPNKAGFMARVGRRNAG 270          
BLAST of FC871479 vs. ExPASy Swiss-Prot
Match: IF2B_WHEAT (Eukaryotic translation initiation factor 2 subunit beta OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.292e-31
Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = 2
Query:    2 VVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFQARVGRRNAG 217
            V+KGRFAPKNFE ILRRY+NEYVIC GCKSPDTILSKENRLFFLRCE+CGS RSVAPIKAGF A+VGRR AG
Sbjct:  198 VIKGRFAPKNFEAILRRYINEYVICHGCKSPDTILSKENRLFFLRCEQCGSSRSVAPIKAGFVAQVGRRKAG 269          
BLAST of FC871479 vs. ExPASy Swiss-Prot
Match: IF2B_ARATH (Eukaryotic translation initiation factor 2 subunit beta OS=Arabidopsis thaliana GN=EMB1401 PE=2 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 1.429e-30
Identity = 62/69 (89.86%), Postives = 64/69 (92.75%), Query Frame = 2
Query:    2 VVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFQARVGRR 208
            VVKGRFAPKNFEGILRRY+ +YVICLGCKSPDTILSKENRLFFLRCEKCGS RSVAPIK GF ARV RR
Sbjct:  198 VVKGRFAPKNFEGILRRYITDYVICLGCKSPDTILSKENRLFFLRCEKCGSQRSVAPIKTGFVARVSRR 266          
BLAST of FC871479 vs. ExPASy Swiss-Prot
Match: IF2B_SCHPO (Probable eukaryotic translation initiation factor 2 subunit beta OS=Schizosaccharomyces pombe GN=tif212 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 7.857e-21
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 2
Query:    2 VVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFQARVGRR 208
            ++KGRF  K  E +LRRY+ EYV C  CKSPDTIL+KENR+FF+ CE CGS RSV  IK G+QA++G+R
Sbjct:  249 IIKGRFQQKQIENVLRRYIVEYVTCKTCKSPDTILTKENRIFFMTCEACGSVRSVQAIKTGYQAQIGKR 317          
BLAST of FC871479 vs. ExPASy Swiss-Prot
Match: IF2B_DROME (Eukaryotic translation initiation factor 2 subunit 2 OS=Drosophila melanogaster GN=eIF-2beta PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.750e-20
Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = 2
Query:    2 VVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFQARVGRRNA 214
            ++KGRF PK  E +LRRY+ EYV C  C+SP+TIL K+ RLFFL+CE CGS  SVA IK+GFQA  G+R A
Sbjct:  236 IIKGRFQPKQIENVLRRYIKEYVTCHTCRSPETILQKDTRLFFLQCESCGSRCSVASIKSGFQAVTGKRAA 306          
BLAST of FC871479 vs. ExPASy Swiss-Prot
Match: IF2B_BOVIN (Eukaryotic translation initiation factor 2 subunit 2 OS=Bos taurus GN=EIF2S2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.605e-19
Identity = 43/69 (62.32%), Postives = 50/69 (72.46%), Query Frame = 2
Query:    2 VVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFQARVGRR 208
            V+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+ RL+FL+CE C S  SVA IK GFQA  GRR
Sbjct:  257 VIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGRR 325          
BLAST of FC871479 vs. ExPASy Swiss-Prot
Match: IF2B_RABIT (Eukaryotic translation initiation factor 2 subunit 2 OS=Oryctolagus cuniculus GN=EIF2S2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.140e-18
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 2
Query:    2 VVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFQARVGRR 208
            V+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+ RL+FL+CE C S  SVA IK GFQA  G+R
Sbjct:  257 VIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGKR 325          
BLAST of FC871479 vs. ExPASy Swiss-Prot
Match: IF2B_MOUSE (Eukaryotic translation initiation factor 2 subunit 2 OS=Mus musculus GN=Eif2s2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.140e-18
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 2
Query:    2 VVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFQARVGRR 208
            V+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+ RL+FL+CE C S  SVA IK GFQA  G+R
Sbjct:  255 VIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGKR 323          
BLAST of FC871479 vs. ExPASy Swiss-Prot
Match: IF2B_HUMAN (Eukaryotic translation initiation factor 2 subunit 2 OS=Homo sapiens GN=EIF2S2 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.140e-18
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 2
Query:    2 VVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFQARVGRR 208
            V+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+ RL+FL+CE C S  SVA IK GFQA  G+R
Sbjct:  257 VIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGKR 325          
BLAST of FC871479 vs. ExPASy Swiss-Prot
Match: IF2B_CAEEL (Eukaryotic translation initiation factor 2 subunit 2 OS=Caenorhabditis elegans GN=K04G2.1 PE=3 SV=4)

HSP 1 Score: 90.1225 bits (222), Expect = 3.650e-18
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 2
Query:    2 VVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFQARVGRRNA 214
            +VKGR+  K FE +LR+Y+ EYV+C  CKSP+T L+K+ RLFFL+C  CGS  SV  IK+GF+A VG+R A
Sbjct:  169 IVKGRWQQKQFESVLRKYIKEYVMCHTCKSPETQLTKDTRLFFLQCTNCGSRCSVTAIKSGFKAVVGKRAA 239          
The following BLAST results are available for this feature:
BLAST of FC871479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
IF2B_MALDO1.249e-3495.83Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_WHEAT1.292e-3187.50Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_ARATH1.429e-3089.86Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_SCHPO7.857e-2162.32Probable eukaryotic translation initiation factor ... [more]
IF2B_DROME1.750e-2061.97Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_BOVIN9.605e-1962.32Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_RABIT2.140e-1860.87Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_MOUSE2.140e-1860.87Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_HUMAN2.140e-1860.87Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_CAEEL3.650e-1857.75Eukaryotic translation initiation factor 2 subunit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AE11FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1AE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871479 ID=FC871479; Name=FC871479; organism=Citrus sinensis; type=EST; length=402bp
GGTCGTGAAGGGCCGATTTGCTCCCAAGAATTTTGAAGGGATACTGCGTC
GATATGTCAATGAATATGTCATCTGTCTTGGGTGCAAAAGTCCTGACACG
ATACTTTCAAAGGAAAACCGCCTCTTCTTTCTCAGATGTGAGAAGTGTGG
TTCTGGACGATCAGTTGCTCCTATCAAAGCTGGTTTCCAGGCACGTGTTG
GTCGTAGAAATGCTGGAATGTGATCTTGTTGTCCTGCTTTTCTCCAGCAT
TTTGAAAAAAAAGCTGTTTGTTTTCATTTTTACCTTATGCGTTTTACTAC
TATTTGGTTTTGACTAATTGTATTTATCTAGCCGGGAAAATATTGATATG
GATGAGCCTTTATAACTAGAATGATTGATTAAAAAAAAAAAAAAAAAAAA
AA
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