FC871466

Overview
NameFC871466
Unique NameFC871466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9984 contig Csv1_Contig9984:45..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871466 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.237e-77
Identity = 138/149 (92.62%), Postives = 146/149 (97.99%), Query Frame = 2
Query:    2 KSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARL 448
            KSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW+RGLAHRA LDNN RLLDFTEKLEAAC+G VESGKMTKDLALIIHGSK++R+HYLNTEEFIDAVA++L+ARL
Sbjct:  262 KSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIHGSKLSRDHYLNTEEFIDAVADELKARL 410          
BLAST of FC871466 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 285.419 bits (729), Expect = 1.990e-76
Identity = 137/150 (91.33%), Postives = 147/150 (98.00%), Query Frame = 2
Query:    2 KSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARLS 451
            KSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRH+RVHQKGGETSTNSIASIFAW+RGLAHRAKLD+NA+LLDFTEKLEAAC+G VE+GKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L ARLS
Sbjct:  263 KSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKLLDFTEKLEAACIGVVEAGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELSARLS 412          
BLAST of FC871466 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.790e-76
Identity = 139/150 (92.67%), Postives = 146/150 (97.33%), Query Frame = 2
Query:    2 KSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLAL-IIHGSKMTREHYLNTEEFIDAVANDLRARL 448
            KSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW+RGLAHRA LDNN RLLDFTEKLEAAC+G VESGKMTKDLAL IIHGSK++REHYLNTEEFIDAVA++L+ARL
Sbjct:  262 KSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIIHGSKLSREHYLNTEEFIDAVADELKARL 411          
BLAST of FC871466 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 9.876e-76
Identity = 135/150 (90.00%), Postives = 146/150 (97.33%), Query Frame = 2
Query:    2 KSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARLS 451
            KSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRH+RVHQKGGETSTNSIASIFAW+RGLAHRAKLD+NA LLDFTEKLEAAC+G VESGKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L+ ++S
Sbjct:  283 KSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNATLLDFTEKLEAACIGVVESGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELKTKIS 432          
BLAST of FC871466 vs. ExPASy Swiss-Prot
Match: IDHC_MICOH (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.019e-57
Identity = 105/151 (69.54%), Postives = 125/151 (82.78%), Query Frame = 2
Query:    2 KSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 451
            KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAHGTVTRHYR+HQKG ETSTN IASIFAWSRGLAHRA+LDNN  L  F + LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L+
Sbjct:  260 KSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNPIASIFAWSRGLAHRARLDNNTELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of FC871466 vs. ExPASy Swiss-Prot
Match: IDHC_MICME (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.019e-57
Identity = 105/151 (69.54%), Postives = 125/151 (82.78%), Query Frame = 2
Query:    2 KSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 451
            KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAHGTVTRHYR+HQKG ETSTN IASIFAWSRGLAHRA+LDNN  L  F + LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L+
Sbjct:  260 KSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNPIASIFAWSRGLAHRARLDNNTELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of FC871466 vs. ExPASy Swiss-Prot
Match: IDHC_RAT (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.751e-56
Identity = 105/151 (69.54%), Postives = 124/151 (82.12%), Query Frame = 2
Query:    2 KSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 451
            KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAWSRGLAHRAKLDNN  L  F   LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L+
Sbjct:  260 KSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFANALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of FC871466 vs. ExPASy Swiss-Prot
Match: IDHC_MOUSE (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.751e-56
Identity = 105/151 (69.54%), Postives = 125/151 (82.78%), Query Frame = 2
Query:    2 KSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 451
            KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAWSRGLAHRAKLDNN  L  F + LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L+
Sbjct:  260 KSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFAKALEDVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of FC871466 vs. ExPASy Swiss-Prot
Match: IDHP_PIG (Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.987e-56
Identity = 107/147 (72.79%), Postives = 118/147 (80.27%), Query Frame = 2
Query:    2 KSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVANDL 436
            KS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  CV TVESG MTKDLA  IHG    +  EH+LNT +F+D + ++L
Sbjct:  268 KSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 414          
BLAST of FC871466 vs. ExPASy Swiss-Prot
Match: IDHP_BOVIN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 2.987e-56
Identity = 107/147 (72.79%), Postives = 118/147 (80.27%), Query Frame = 2
Query:    2 KSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVANDL 436
            KS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  CV TVESG MTKDLA  IHG    +  EH+LNT +F+D + ++L
Sbjct:  299 KSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 445          
The following BLAST results are available for this feature:
BLAST of FC871466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_TOBAC5.237e-7792.62Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOYBN1.990e-7691.33Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHC_SOLTU5.790e-7692.67Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHP_MEDSA9.876e-7690.00Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
IDHC_MICOH6.019e-5769.54Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_MICME6.019e-5769.54Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_RAT1.751e-5669.54Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rat... [more]
IDHC_MOUSE1.751e-5669.54Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus... [more]
IDHP_PIG2.987e-5672.79Isocitrate dehydrogenase [NADP], mitochondrial (Fr... [more]
IDHP_BOVIN2.987e-5672.79Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK2DB02FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2DB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871466 ID=FC871466; Name=FC871466; organism=Citrus sinensis; type=EST; length=705bp
CAAAAGTGAAGGAGGTTACGTGTGGGCTTGCAAAAATTATGATGGAGATG
TCCAGAGTGATTTCCTAGCTCAAGGGTTTGGATCTCTTGGATTGATGACA
TCTGTACTGGTATGCCCTGATGGGAAGACAATTGAAGCCGAAGCCGCCCA
TGGAACAGTCACCCGACACTACAGAGTTCATCAGAAAGGTGGTGAAACTA
GCACAAACAGCATAGCCTCCATCTTTGCTTGGTCACGAGGGCTTGCACAT
AGGGCGAAGTTGGACAACAATGCTAGGCTATTGGATTTTACTGAGAAACT
AGAAGCTGCATGTGTTGGCACTGTTGAATCTGGGAAGATGACCAAGGATC
TTGCACTTATTATCCATGGATCTAAGATGACTAGGGAACACTATCTGAAT
ACTGAAGAGTTCATTGATGCTGTGGCCAACGATCTAAGAGCAAGACTCTC
TGGCAAAGCATGATTTTATGCTACACATTCAAAGGTAAAGACTTGGGGAA
GCTTCCTTTGGTTATCTTTTTCATATTATGCTGAGAAGAAATAATTGAAG
AGGGGAAAATTGGGGATTGGGATTTGGTTCTCTTCTAATTCCTACAATAG
ACTGCTTTCCTGTTGATCGACAAACTCTCATTTTCATGCAAGCAAATGTC
TTGAACATGGCTTGTTATAAACAAAACTATTGCTGCCAAAAAAAAAAAAA
AAAAA
back to top