FC871453

Overview
NameFC871453
Unique NameFC871453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length290
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3493 contig Csv1_Contig3493:337..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871453 vs. ExPASy Swiss-Prot
Match: SMT3_ORYSJ (Ubiquitin-like protein SMT3 OS=Oryza sativa subsp. japonica GN=SMT3 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.664e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 2 
Query:    2 SIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGAL 118
            +IAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG L
Sbjct:   60 AIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGCL 98
[Close]
BLAST of FC871453 vs. ExPASy Swiss-Prot
Match: SMT3_ARATH (Ubiquitin-like protein SMT3 OS=Arabidopsis thaliana GN=SMT3 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.319e-14
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 2 
Query:    2 SIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGALG 121
            SIAFLFDGRRLR EQTPDEL+MEDGDEIDAMLHQTGG+ G
Sbjct:   57 SIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGGSGG 96
The following BLAST results are available for this feature:
BLAST of FC871453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SMT3_ORYSJ6.664e-1594.87Ubiquitin-like protein SMT3 OS=Oryza sativa subsp.... [more]
SMT3_ARATH4.319e-1490.00Ubiquitin-like protein SMT3 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2DA10FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2DA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871453 ID=FC871453; Name=FC871453; organism=Citrus sinensis; type=EST; length=290bp
CTCTATTGCTTTCTTGTTTGATGGGCGGAGACTCCGAGGAGAGCAGACTC
CAGATGAGCTTGAGATGGAGGATGGAGATGAAATTGATGCAATGCTGCAT
CAGACTGGAGGTGCGCTTGGAAGCGGTTAGCTGCAGTTTGAAATATTTTG
AGCATCGCTGGCGGACTTGATGTTTGAGTTTTTTAAATTAGCCTATATCT
ATGGAAATATTACTGTAAATGATGACTTGGATCTTATAATTAACTTGAAT
TTAAGTCATGGTTTATTATCAAAAAAAAAAAAAAAAAAAA
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