FC871451

Overview
NameFC871451
Unique NameFC871451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4464 contig Csv1_Contig4464:238..921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC871451 vs. ExPASy Swiss-Prot
Match: XRCC4_ARATH (DNA repair protein XRCC4 OS=Arabidopsis thaliana GN=XRCC4 PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 9.000e-50
Identity = 104/166 (62.65%), Postives = 127/166 (76.51%), Query Frame = 3 
Query:    6 KRLSWTFEKEGTKLEWRWKFGPAPNSKKVTAGILDFLMDANIRLSDEVVTKTQSFERLKVETQKCLAQSERFKNEKVEFESAIYSKFLGVLNSKKSKLRELRDKLSKQAVMGDLQQEEEESTDKTESFDGG-SDDDKSEEQPTKDITSTSIGVPASRARGRKRISR 500
            KRLSWTFEKEGTKLEWRWK  P+ +SKK+T GILDFLM+ANIRLS+EVV KT+SFE+++ E ++CLAQ E+  +EK EFESA Y+KFL VLN+KK+KLR LRDK     V+     EEEESTDK ESF+ G SDD+KSEE+ +K  TS       S+ARG KR +R
Sbjct:  110 KRLSWTFEKEGTKLEWRWKCKPSDDSKKITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAKFLSVLNAKKAKLRALRDKEDSVRVV-----EEEESTDKAESFESGRSDDEKSEEEASKKATS-------SKARGGKRAAR 263
The following BLAST results are available for this feature:
BLAST of FC871451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
XRCC4_ARATH9.000e-5062.65DNA repair protein XRCC4 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2DA07FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2DA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871451 ID=FC871451; Name=FC871451; organism=Citrus sinensis; type=EST; length=692bp
GATGTAAAAGATTGTCATGGACATTTGAGAAGGAGGGGACTAAGCTTGAA
TGGCGGTGGAAATTCGGACCGGCACCTAATAGCAAGAAGGTTACTGCAGG
AATTTTGGACTTTCTTATGGATGCAAACATTAGACTCAGTGATGAAGTTG
TCACAAAAACTCAATCATTTGAGAGACTGAAAGTGGAGACTCAGAAATGT
TTAGCACAAAGTGAGAGATTTAAAAATGAGAAGGTGGAATTTGAATCAGC
AATCTACTCAAAGTTCCTTGGTGTGTTGAATTCAAAGAAATCAAAACTCA
GAGAGCTTCGAGACAAGCTTTCAAAACAGGCAGTCATGGGGGATTTGCAA
CAAGAAGAGGAAGAGTCTACAGACAAAACTGAGAGTTTTGATGGAGGCAG
TGATGATGACAAGAGTGAGGAACAACCCACAAAGGATATTACAAGCACTT
CAATAGGTGTTCCAGCTAGTAGGGCTCGTGGTAGAAAGAGGATTTCTCGC
AAATAGCATCTAAGTAATTAAATTTAGATTTGAGCAGTGAATGCTAACCT
CTCCTTTTTCTTACTTATAATGTAAATCATGTAATGAATGTGCTGAGTTT
TGTAGAGGGATACAGATTTTTCTTCATTCCCAATAAGTAAATGCAGCAAA
AGGACTTTAAGTCCCTTAGCTTTCAAAAAAAAAAAAAAAAAA
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