EY680436

Overview
NameEY680436
Unique NameEY680436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680436 vs. ExPASy Swiss-Prot
Match: DMI1_MEDTR (Putative ion channel DMI-1 OS=Medicago truncatula GN=DMI1 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.750e-77
Identity = 146/160 (91.25%), Postives = 155/160 (96.88%), Query Frame = 2
Query:    2 KRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEEISFFDIMIRGRQRQEIVIGYRLANTERAIINPSQKSEPRKWSLDDVFVVISSGD 481
            +RLPYRDTK TSLRLSGFSH+SWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEE+ F+DIMIRGR R+EIVIGYRLAN ERAIINPS+KS PRKWSLDDVFVV++SG+
Sbjct:  723 RRLPYRDTKSTSLRLSGFSHNSWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEELCFYDIMIRGRTRKEIVIGYRLANQERAIINPSEKSVPRKWSLDDVFVVLASGE 882          
BLAST of EY680436 vs. ExPASy Swiss-Prot
Match: POLLU_LOTJA (Putative ion channel POLLUX, chloroplastic OS=Lotus japonicus GN=POLLUX PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.140e-75
Identity = 143/160 (89.38%), Postives = 152/160 (95.00%), Query Frame = 2
Query:    2 KRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEEISFFDIMIRGRQRQEIVIGYRLANTERAIINPSQKSEPRKWSLDDVFVVISSGD 481
            +RLPY+DTK TSLRLSGFSH+SWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAE+GNEMCIKPAEFYLFDQEE+ F+DIMIRGR RQEI+IGYRLAN ERAIINPS+K   RKWSL DVFVVI+SGD
Sbjct:  758 RRLPYKDTKSTSLRLSGFSHNSWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEQGNEMCIKPAEFYLFDQEELCFYDIMIRGRARQEIIIGYRLANQERAIINPSEKLVARKWSLGDVFVVIASGD 917          
BLAST of EY680436 vs. ExPASy Swiss-Prot
Match: DMI1_ORYSJ (Probable ion channel DMI1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0870100 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 6.240e-67
Identity = 130/157 (82.80%), Postives = 144/157 (91.72%), Query Frame = 2
Query:    2 KRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEEISFFDIMIRGRQRQEIVIGYRLANTERAIINPSQKSEPRKWSLDDVFVVIS 472
            KRLP ++ K + LR +GF HSSWIREMQ ASDKSIIISEILDSRTRNLVSVS+ISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCI+ AEFYL++QEE+SFFDIM+R R+R E+VIGYRLAN ++AIINP QKSE RKWSLDDVFVVIS
Sbjct:  785 KRLPSKELK-SPLRYNGFCHSSWIREMQHASDKSIIISEILDSRTRNLVSVSKISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIRSAEFYLYEQEELSFFDIMVRARERDEVVIGYRLANDDQAIINPEQKSEIRKWSLDDVFVVIS 940          
BLAST of EY680436 vs. ExPASy Swiss-Prot
Match: DMI1_ARATH (Putative ion channel DMI1 OS=Arabidopsis thaliana GN=At5g49960 PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.045e-66
Identity = 123/158 (77.85%), Postives = 145/158 (91.77%), Query Frame = 2
Query:    2 KRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEEISFFDIMIRGRQRQEIVIGYRLANTERAIINPSQKSEPRKWSLDDVFVVISS 475
            KRLPY+D K ++LR+SGF +  WIR+MQQASDKSI+ISEILDSRT+NLVSVSRISDYVLSNELVSMALAMVAEDKQINRVL+ELFAE+GNE+CI+PAEFY++DQEE+ F+DIM R RQRQEI+IGYRLA  E+A+INP+ KS+  KWSLDDVFVVI+S
Sbjct:  665 KRLPYKDAKSSALRISGFPNCCWIRKMQQASDKSIVISEILDSRTKNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLKELFAEKGNELCIRPAEFYIYDQEEVCFYDIMRRARQRQEIIIGYRLAGMEQAVINPTDKSKLTKWSLDDVFVVIAS 822          
BLAST of EY680436 vs. ExPASy Swiss-Prot
Match: DMI1L_ORYSJ (Probable ion channel DMI1-like, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0843600 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.460e-55
Identity = 108/157 (68.79%), Postives = 130/157 (82.80%), Query Frame = 2
Query:    2 KRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEEISFFDIMIRGRQRQEIVIGYRLANTERAIINPSQKSEPRKWSLDDVFVVIS 472
            KRLP+R+   + +    F   SWI EMQQASDKS+IISEILD RT+NL+SVS+ISDYVLSNELVSMALAMVAED+QIN VLEELFAE+GNEM I+PA+ YL + EE++FF++M+RGRQR+EIVIGYRL + ERAIINP  K   R+WS  DVFVVI+
Sbjct:  734 KRLPFREAMVSHVTRGSFCEGSWIGEMQQASDKSVIISEILDPRTKNLLSVSKISDYVLSNELVSMALAMVAEDRQINDVLEELFAEQGNEMQIRPADLYLREDEELNFFEVMLRGRQRKEIVIGYRLVDAERAIINPPDKVSRRRWSAKDVFVVIT 890          
BLAST of EY680436 vs. ExPASy Swiss-Prot
Match: CASTO_LOTJA (Putative ion channel CASTOR, chloroplastic OS=Lotus japonicus GN=CASTOR PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.324e-52
Identity = 107/157 (68.15%), Postives = 130/157 (82.80%), Query Frame = 2
Query:    2 KRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEEISFFDIMIRGRQRQEIVIGYRLANTERAIINPSQKSEPRKWSLDDVFVVIS 472
            +RLPY     +  +   FS  SWI EM+QASDK++IISEILD RT+NL+S+S+ISDYVLSNELVSMALAMVAED+QIN VLEELFAEEGNEM I+ A+ YL + EE+SF++IM+R RQR+EI+IGYRLAN ERA+INP  K+  RKWSL DVFVVI+
Sbjct:  695 RRLPYV-AMASQTQGGNFSKGSWIGEMKQASDKTVIISEILDPRTKNLLSMSKISDYVLSNELVSMALAMVAEDRQINDVLEELFAEEGNEMHIRQADIYLREGEEMSFYEIMLRARQRREILIGYRLANAERAVINPPAKTGRRKWSLKDVFVVIT 850          
The following BLAST results are available for this feature:
BLAST of EY680436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DMI1_MEDTR1.750e-7791.25Putative ion channel DMI-1 OS=Medicago truncatula ... [more]
POLLU_LOTJA2.140e-7589.38Putative ion channel POLLUX, chloroplastic OS=Lotu... [more]
DMI1_ORYSJ6.240e-6782.80Probable ion channel DMI1, chloroplastic OS=Oryza ... [more]
DMI1_ARATH4.045e-6677.85Putative ion channel DMI1 OS=Arabidopsis thaliana ... [more]
DMI1L_ORYSJ2.460e-5568.79Probable ion channel DMI1-like, chloroplastic OS=O... [more]
CASTO_LOTJA3.324e-5268.15Putative ion channel CASTOR, chloroplastic OS=Lotu... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-011-A10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680436 ID=EY680436; Name=EY680436; organism=Citrus sinensis; type=EST; length=811bp
AAAACGTCTGCCTTACAGAGATACAAAGCCTACTTCCTTACGGTTGTCCG
GGTTCTCTCACAGCTCCTGGATTCGTGAAATGCAGCAGGCTTCAGACAAA
TCTATTATTATCAGTGAAATCTTAGATTCCAGGACTAGGAACCTGGTATC
AGTGTCCAGAATCAGCGATTATGTACTATCAAATGAACTTGTGAGTATGG
CACTGGCAATGGTGGCTGAAGACAAGCAAATCAATCGCGTTCTTGAGGAA
CTTTTTGCTGAGGAGGGGAACGAAATGTGCATCAAACCGGCAGAGTTCTA
CTTATTTGACCAGGAAGAGATTTCATTTTTTGATATAATGATTCGGGGTC
GTCAAAGACAGGAAATTGTGATCGGCTACCGGCTTGCTAATACCGAGCGC
GCTATAATCAACCCTTCACAAAAATCAGAACCTAGGAAATGGTCTCTTGA
TGATGTTTTTGTTGTCATTTCTTCAGGAGACTGAAAATTAGAAGGTACCT
GTCAGGTTCAGTTAGCTTAGTCGACTGTGTAGTGATTGACACATAACGTA
ACTCAAGACGATATCCTCTGATCACGACCCGACCAAAATTTCGGCTTCCA
GGTTTTCTTCTGATTCCCCCTTTAATCCAAGCATAAGATTATAGGAATAG
GTTCCTTCCGGAACCATCCTTCCCACTATGTGGTAACAATTTGAATTAAT
AACTTTGGCGGGGAAAAAATGAAATAAATTTTTGGGGGAAAGGGACCCAA
AAGGGTTTCTTAAGGGAAAAAAAATTTCCCAAAGGTTTTTTCCCGGGGAA
ACATTCCCCCA
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