FC871427

Overview
NameFC871427
Unique NameFC871427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5271 contig Csv1_Contig5271:411..921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871427 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 4.180e-46
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 2
Query:    2 SLFKAKLLLAPVADGISLSIGRRGYAAAAPLGTISRTGIMEKNDLTPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 283
            SLFKAKLLLAPVADGISLSI RRGYAAAAPLGTISRTGIMEKNDL PAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    4 SLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of FC871427 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.719e-20
Identity = 53/101 (52.48%), Postives = 66/101 (65.35%), Query Frame = 2
Query:    2 SLFKAKLLLAPVADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 280
            S+   KLL A + DG+ +SI RRGY+ A P     +  R G M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    4 SVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of FC871427 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.815e-18
Identity = 50/101 (49.50%), Postives = 64/101 (63.37%), Query Frame = 2
Query:    2 SLFKAKLLLAPVADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 280
            S+   K L A V D + +SI RRGY+ A P     +  R G M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    4 SVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of FC871427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI4.180e-4697.87Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI6.719e-2052.48Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI4.815e-1849.50Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK1AB02FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1AB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871427 ID=FC871427; Name=FC871427; organism=Citrus sinensis; type=EST; length=511bp
CTCTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTGCTGATGGCATCT
CGCTCTCCATTGGCAGGAGAGGATATGCTGCAGCAGCACCCTTGGGAACC
ATATCTCGGACTGGTATCATGGAGAAAAATGATTTGACGCCTGCGGTGAG
AGAGGATTCTGGGGCCTCTTCTGCCTGGGCCCCAGATCCCATCACTGGGT
ACTACAGGCCGGAGAATCGGGCGGTCGAGATTGATCCAGCAGAGCTTCGA
GAGATGCTGTTGAACCACAAAGTCAGGGCACACTAGGGAGTGGTCGCGCA
TAGCAGCAGATCCTTTGCTGTTAGCGGTGCTTTAACTTTTAAGTGATGTT
GTTACAGTAGCAATTTTGACTCACTCTAAAGTCTTTGCTGTTGTTTTGAT
ATCAACTGTTATTTACAACTTTTAATAGTGCATTTCCATGATTTTGTCTC
TATTAACTTGTCAATAAAAGTAAAGAATGCCTGTATTGCAAAAAAAAAAA
AAAAAAAAAAA
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