FC871416

Overview
NameFC871416
Unique NameFC871416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length413
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4671 contig Csv1_Contig4671:457..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871416 vs. ExPASy Swiss-Prot
Match: ATPG3_IPOBA (ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 GEMLDRLTLTYNRTRQASITTELIEIISGASALEG 105
            GEMLDRLTLTYNRTRQASITTELIEIISGASALEG
Sbjct:  292 GEMLDRLTLTYNRTRQASITTELIEIISGASALEG 326
[Close]
BLAST of FC871416 vs. ExPASy Swiss-Prot
Match: ATPG3_ARATH (ATP synthase subunit gamma, mitochondrial OS=Arabidopsis thaliana GN=ATPC PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.396e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 GEMLDRLTLTYNRTRQASITTELIEIISGASALE 102
            GEMLDRLTLTYNRTRQASITTELIEIISGASALE
Sbjct:  289 GEMLDRLTLTYNRTRQASITTELIEIISGASALE 322
The following BLAST results are available for this feature:
BLAST of FC871416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ATPG3_IPOBA8.857e-12100.00ATP synthase subunit gamma, mitochondrial OS=Ipomo... [more]
ATPG3_ARATH4.396e-11100.00ATP synthase subunit gamma, mitochondrial OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK1AA03FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1AA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871416 ID=FC871416; Name=FC871416; organism=Citrus sinensis; type=EST; length=413bp
GGAGAAATGCTTGATCGCCTCACTCTTACTTATAACAGAACTCGTCAAGC
ATCTATCACCACCGAGTTGATTGAGATTATATCTGGAGCATCAGCACTGG
AAGGCTGATTACAAAAGCGACAGTGCTCACTTTTCTTGACAGTGACGAAA
TAAATCCTTGGTGGAGGCTTTGTTCAAACTTCAATGTGGTACTTTCATAA
GAGTTTTTGTTGAGCTACTCCAATAATCTCTCCAGTGTTAAAACTTGGGG
AATTAACAATTATACTTGCGATATTTTCAATATAGTTTTTGATTCTCAAT
TATTGTGCCTTGCAAGTGAACATAAATGGCTTGGTGTTTGGGACTTAACA
GCCCCTGCAAGTTAATGATTTTATGACCCTGTTTTTACTTTAAAAAAAAA
AAAAAAAAAAAAA
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