FC871414
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC871414 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.798e-28 Identity = 92/222 (41.44%), Postives = 114/222 (51.35%), Query Frame = 1 Query: 115 SSSTASVLKPLSSMADSTS--LLSPPSIFARNPYFSIHPRPRPIXXXXXXXXXXXXXXXXXXXXTTHF--SSFTAFVAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEAGERQEGSXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKAVE 768 SS S LKPL+ MADS+S + S PSI + I + TH S F +FVAQTSDWA EE + + D +EG++S+ E EG+ + ER E +AKLFVGNL YDV+S+ LAMLFE+AGTVEIAEVIYNRETD+SRGFGFVT+S+V+EAE AVE Sbjct: 3 SSIVTSSLKPLA-MADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGRINLPLSFSRVSLSLKTKTHLKKSPFVSFVAQTSDWA--EEGGEGSVAVEETENSLESQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAE------------FPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209 HSP 2 Score: 70.4774 bits (171), Expect = 1.171e-11 Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = 1 Query: 592 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKAV 765 +++VGNLP+DVD+ +L LF + G V A V+Y+RET RSRGFGFVT+S V+E +A+ Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 302
BLAST of FC871414 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 9.865e-27 Identity = 94/233 (40.34%), Postives = 117/233 (50.21%), Query Frame = 1 Query: 112 MSSSTASVLKPLSSMADSTSLLSPPSIFARN--------PYFSIHPRPRPIXXXXXXXXXXXXXXXXXXXXTTHFSSFTAFVAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEA-----GERQEGSXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKAVEM 771 MS +T ++KP SSMA ++ L+S P +FA PY S +P + T+ + +TS A QEE+ NT I G + G+L ++ EP GE+T E G+ E DAKLFVGNLPYDVDSE LA LFE+AG VEIAEVIYNR+TD+SRGFGFVT+STVEEAEKAVEM Sbjct: 1 MSCATKPIIKP-SSMATNSCLISLPPLFATTTKSKSFAYPYLSNTLKPIKLLHLSC----------------TYSPCILSPKKKTSVSALQEEE--NTLIL-----------------DGQGQESGDLFNF-EPSGEETEEEGFVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196
BLAST of FC871414 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.583e-24 Identity = 72/147 (48.98%), Postives = 85/147 (57.82%), Query Frame = 1 Query: 331 VAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEAGERQEGSXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKAVEM 771 VAQTS+W ++E N + G + EG +S WG E V + G + G +AKLFVGNLPYDVDSEKLA +F+ AG VEIAEVIYNRETDRSRGFGFVT+STVEEAEKAVE+ Sbjct: 2 VAQTSEW--EQEGSTNAVLE------------------GESDPEGAVS-WGS---ETQVSDEGGVEGGQGFSEPPE---------EAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115
BLAST of FC871414 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.333e-23 Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 1 Query: 586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKAVEM 771 DAKLFVGNLPYD+DSE LA LF++AG VEIAEVIYNRETDRSRGFGFVT+STVEEA+KAVE+ Sbjct: 96 DAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157
BLAST of FC871414 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.336e-15 Identity = 40/61 (65.57%), Postives = 49/61 (80.33%), Query Frame = 1 Query: 586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKAVE 768 D KLFVGNLP++VDS +LA LFE AG VE+ EVIY++ T RSRGFGFVT+S+V E E A + Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQ 150
BLAST of FC871414 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.977e-15 Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 1 Query: 586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKA 762 D KLFVGNLP+ VDS LA LFE+AG VE+ EVIY++ T RSRGFGFVT+ST EE E A Sbjct: 86 DLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAA 144
BLAST of FC871414 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.888e-15 Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 1 Query: 586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKA 762 D KLFVGNLP+ VDS LA LFE+AG VEI EVIY++ + RSRGFGFVT+ST EE E A Sbjct: 87 DLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAA 145
BLAST of FC871414 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 1.131e-14 Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 1 Query: 586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKAVE 768 D KLFVGNL ++VDS +LA LFE AG VE+ EVIY++ T RSRGFGFVT+ST E E A + Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQ 158
BLAST of FC871414 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14 Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1 Query: 586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKAVE 768 D K+FVGNLP+ DS LA LFE+AG VE+ EVIY++ T RSRGFGFVT+S+ EE E A + Sbjct: 86 DLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQ 146
BLAST of FC871414 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.639e-13 Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 1 Query: 586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKAVE 768 D K+FVGNL + DS LA LFE+AG VE+ EVIY++ T RSRGFGFVT+S+ EE E A + Sbjct: 86 DLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQ 146 The following BLAST results are available for this feature:
BLAST of FC871414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871414 ID=FC871414; Name=FC871414; organism=Citrus sinensis; type=EST; length=771bpback to top |