FC871414

Overview
NameFC871414
Unique NameFC871414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12720 contig Csv1_Contig12720:17..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871414 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.798e-28
Identity = 92/222 (41.44%), Postives = 114/222 (51.35%), Query Frame = 1
Query:  115 SSSTASVLKPLSSMADSTS--LLSPPSIFARNPYFSIHPRPRPIXXXXXXXXXXXXXXXXXXXXTTHF--SSFTAFVAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEAGERQEGSXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKAVE 768
            SS   S LKPL+ MADS+S  + S PSI +      I      +                     TH   S F +FVAQTSDWA  EE  + +                       D +EG++S+  E EG+ +     ER E                  +AKLFVGNL YDV+S+ LAMLFE+AGTVEIAEVIYNRETD+SRGFGFVT+S+V+EAE AVE
Sbjct:    3 SSIVTSSLKPLA-MADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGRINLPLSFSRVSLSLKTKTHLKKSPFVSFVAQTSDWA--EEGGEGSVAVEETENSLESQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAE------------FPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209          

HSP 2 Score: 70.4774 bits (171), Expect = 1.171e-11
Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  592 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKAV 765
            +++VGNLP+DVD+ +L  LF + G V  A V+Y+RET RSRGFGFVT+S V+E  +A+
Sbjct:  245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 302          
BLAST of FC871414 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.865e-27
Identity = 94/233 (40.34%), Postives = 117/233 (50.21%), Query Frame = 1
Query:  112 MSSSTASVLKPLSSMADSTSLLSPPSIFARN--------PYFSIHPRPRPIXXXXXXXXXXXXXXXXXXXXTTHFSSFTAFVAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEA-----GERQEGSXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKAVEM 771
            MS +T  ++KP SSMA ++ L+S P +FA          PY S   +P  +                     T+     +   +TS  A QEE+  NT I                   G  +  G+L ++ EP GE+T  E      G+  E                  DAKLFVGNLPYDVDSE LA LFE+AG VEIAEVIYNR+TD+SRGFGFVT+STVEEAEKAVEM
Sbjct:    1 MSCATKPIIKP-SSMATNSCLISLPPLFATTTKSKSFAYPYLSNTLKPIKLLHLSC----------------TYSPCILSPKKKTSVSALQEEE--NTLIL-----------------DGQGQESGDLFNF-EPSGEETEEEGFVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196          
BLAST of FC871414 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.583e-24
Identity = 72/147 (48.98%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  331 VAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEAGERQEGSXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKAVEM 771
            VAQTS+W  ++E   N  +                   G  + EG +S WG    E  V + G  + G                 +AKLFVGNLPYDVDSEKLA +F+ AG VEIAEVIYNRETDRSRGFGFVT+STVEEAEKAVE+
Sbjct:    2 VAQTSEW--EQEGSTNAVLE------------------GESDPEGAVS-WGS---ETQVSDEGGVEGGQGFSEPPE---------EAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115          
BLAST of FC871414 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.333e-23
Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 1
Query:  586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKAVEM 771
            DAKLFVGNLPYD+DSE LA LF++AG VEIAEVIYNRETDRSRGFGFVT+STVEEA+KAVE+
Sbjct:   96 DAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157          
BLAST of FC871414 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.336e-15
Identity = 40/61 (65.57%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKAVE 768
            D KLFVGNLP++VDS +LA LFE AG VE+ EVIY++ T RSRGFGFVT+S+V E E A +
Sbjct:   90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQ 150          
BLAST of FC871414 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.977e-15
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 1
Query:  586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKA 762
            D KLFVGNLP+ VDS  LA LFE+AG VE+ EVIY++ T RSRGFGFVT+ST EE E A
Sbjct:   86 DLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAA 144          
BLAST of FC871414 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.888e-15
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 1
Query:  586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKA 762
            D KLFVGNLP+ VDS  LA LFE+AG VEI EVIY++ + RSRGFGFVT+ST EE E A
Sbjct:   87 DLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAA 145          
BLAST of FC871414 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.131e-14
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 1
Query:  586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKAVE 768
            D KLFVGNL ++VDS +LA LFE AG VE+ EVIY++ T RSRGFGFVT+ST  E E A +
Sbjct:   98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQ 158          
BLAST of FC871414 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1
Query:  586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKAVE 768
            D K+FVGNLP+  DS  LA LFE+AG VE+ EVIY++ T RSRGFGFVT+S+ EE E A +
Sbjct:   86 DLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQ 146          
BLAST of FC871414 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.639e-13
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTLSTVEEAEKAVE 768
            D K+FVGNL +  DS  LA LFE+AG VE+ EVIY++ T RSRGFGFVT+S+ EE E A +
Sbjct:   86 DLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQ 146          
The following BLAST results are available for this feature:
BLAST of FC871414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ROC3_ARATH1.798e-2841.4431 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC4_NICSY9.865e-2740.3431 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_SPIOL4.583e-2448.9828 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC3_NICSY1.333e-2385.4828 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_ARATH1.336e-1565.57Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ROC2_NICSY2.977e-1569.4929 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC2_NICPL3.888e-1569.4931 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_ARATH1.131e-1463.9329 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_NICSY2.520e-1462.3029 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL3.639e-1360.6630 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CH12FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871414 ID=FC871414; Name=FC871414; organism=Citrus sinensis; type=EST; length=771bp
CTCGCTCGCTCTCTTGCTAAAGCTCTCCTCTCCCAGTCCTCTCTCTCACC
ATTCTACCCCTTATCCTTAGAGCTCTCCTCTGAAGTCTAAACCCTTTTCC
TCTCTGTGAAAATGTCTTCTTCAACAGCATCTGTATTGAAACCCTTATCA
TCGATGGCGGACTCTACTTCTCTACTTTCGCCGCCCTCTATCTTCGCCCG
AAACCCATATTTCTCTATCCACCCCAGACCCAGACCTATCAAGCTTCACC
TTTCCGACTCCTCCTTATCTTCGAAAGGTTTCTCCTTTAAGCTCAAAAAA
ACTACCCATTTCTCTTCATTCACGGCTTTCGTTGCCCAGACGTCGGACTG
GGCCGACCAAGAAGAAGACAAAGACAACACCACCATCACTCTTGAACAAG
AACAAGAAGAGAATGGGGAAGAAGAACCGAATTGGGAAAATCAAGGAGCC
GATGAAACCGAAGGGAATTTATCTGATTGGGGGGAACCCGAAGGCGAAGA
CACAGTTGTTGAGGCTGGTGAAAGGCAGGAGGGGAGTGGTGAAGAGGGCG
TTTTTGAGGAAGAGGAATTTGTGGAACCACCTGAGGATGCTAAGTTGTTT
GTTGGGAACTTGCCCTATGATGTTGATAGTGAAAAGCTTGCTATGCTTTT
TGAGAAGGCTGGAACTGTCGAGATTGCCGAGGTTATTTACAACAGGGAGA
CTGACCGGAGTCGTGGCTTTGGGTTCGTGACATTGAGTACTGTTGAGGAA
GCTGAAAAGGCTGTGGAAATG
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