FC871413

Overview
NameFC871413
Unique NameFC871413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length196
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6614 contig Csv1_Contig6614:1..196. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC871413 vs. ExPASy Swiss-Prot
Match: GRP2_NICSY (Glycine-rich protein 2 OS=Nicotiana sylvestris GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.787e-11
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 2 
Query:   65 ERGTGKVTRTSDQKGVGFLTPDDGGEDVFVHQSAIRVEGFRSL 193
            +R  G V   SDQKG GF+TPDDGGED+FVHQS IR EGFRSL
Sbjct:    7 QRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSL 49
The following BLAST results are available for this feature:
BLAST of FC871413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GRP2_NICSY5.787e-1172.09Glycine-rich protein 2 OS=Nicotiana sylvestris GN=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2CH11FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871413 ID=FC871413; Name=FC871413; organism=Citrus sinensis; type=EST; length=196bp
CCAGTCTCTCATTTTTGGCTCTCTAGGGAAAGGGTCTTTCTTTTCGTTAT
CACACATGAGATCCGAACGAGGTACAGGCAAGGTCACTCGGACCAGCGAC
CAAAAGGGGGTCGGCTTCCTCACCCCAGATGACGGGGGCGAGGACGTGTT
CGTCCACCAGTCGGCGATCCGCGTCGAGGGCTTCCGCAGCCTCGGC
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