FC871412

Overview
NameFC871412
Unique NameFC871412
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6613 contig Csv1_Contig6613:641..1273. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC871412 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.304e-49
Identity = 97/164 (59.15%), Postives = 110/164 (67.07%), Query Frame = 1 
Query:  151 EHVPPELPEPALGISFARDGMQEKDWLSLPAVHSDAWLLAVAFYFGARFGFDKADKKRLFNMINELPSLFEVVTGAAKKQVXXXXXXXXXXXXXXXXXXXVQRGSESHTKYSKPM---QPNXXXXXXXXXXXXXXXXTLCGACGENYASDEFWICCDICEKWYH 633
            E VPPELPEP LGI+FARDGM EKDWLSL AVHSDAWLLAVAF+FGARFGFDKAD+KRLFNM+N+LP++FEVV G AKKQ                     +RGSES  K+SKP                       T CGACGE+YA+DEFWICCD+CE W+H
Sbjct:   65 EEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQ--GKDKSSVSNNSSNRSKSSSKRGSESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFH 226
The following BLAST results are available for this feature:
BLAST of FC871412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH1.304e-4959.15PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2CH10FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871412 ID=FC871412; Name=FC871412; organism=Citrus sinensis; type=EST; length=633bp
AGGATTTTAAATTTTGTTGAAAGAGTTTCTAGGGGGTATTTGTGATGGCA
TGTAATAATTTTAAAAATTAATCTAATTTATCACGTAAGCTGGCTGCTCT
CTGAATGATAGAGCTGCCTCATGAGCGGAGGAAATATAATTTGCCAGACT
GAACACGTGCCTCCAGAGCTTCCAGAGCCTGCATTGGGTATCAGCTTTGC
AAGAGATGGTATGCAAGAAAAGGATTGGCTGTCTTTGCCTGCTGTCCATA
GTGATGCATGGCTGCTGGCTGTTGCGTTTTATTTTGGTGCCAGGTTCGGA
TTTGATAAAGCTGACAAAAAACGGCTTTTTAACATGATAAATGAACTTCC
ATCGTTATTTGAAGTTGTAACTGGTGCAGCTAAGAAACAAGTTAAGGAGA
AGTCATCACTCTCAAATCATAGTAGCAACAAATCCAAGACACACTCCAAA
GTGCAGCGAGGATCCGAATCTCATACCAAGTATTCTAAGCCAATGCAACC
AAACGATGAAGATGAGGGCATGGACGAGGAAAAAGAAGATGAGCATGGTG
ACACTTTATGCGGGGCTTGTGGTGAGAACTATGCTTCGGATGAATTCTGG
ATTTGTTGTGACATCTGCGAAAAGTGGTACCAT
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