FC871409

Overview
NameFC871409
Unique NameFC871409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2542 contig Csv1_Contig2542:346..979. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871409 vs. ExPASy Swiss-Prot
Match: GPX4_CITSI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Citrus sinensis GN=CSA PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.026e-70
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1
Query:    1 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLET 384
            SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLET
Sbjct:   39 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLET 166          
BLAST of FC871409 vs. ExPASy Swiss-Prot
Match: GPX4_MESCR (Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC1 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 4.779e-60
Identity = 107/128 (83.59%), Postives = 120/128 (93.75%), Query Frame = 1
Query:    1 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLET 384
            SQCGLTNSNY EL++LY++YK++GLEILAFPCNQFG QEPGDNEQI EFACTRFKAEFPIFDKVDVNG NAAP+YK+LKSSKGGLFGD IKWNF+KFLVD++G VV+RYAPTTSP SIEKDIKKL+ T
Sbjct:   42 SQCGLTNSNYPELTKLYEQYKDKGLEILAFPCNQFGNQEPGDNEQIMEFACTRFKAEFPIFDKVDVNGSNAAPVYKYLKSSKGGLFGDGIKWNFTKFLVDRDGKVVDRYAPTTSPASIEKDIKKLIGT 169          
BLAST of FC871409 vs. ExPASy Swiss-Prot
Match: GPX6_ARATH (Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana GN=GPX6 PE=2 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 1.816e-59
Identity = 106/126 (84.13%), Postives = 117/126 (92.86%), Query Frame = 1
Query:    1 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 378
            SQCGLTNSNYTEL+QLY+KYK  G EILAFPCNQFG QEPG NE+I +FACTRFKAE+PIFDKVDVNGD AAP+YK LKSSKGGLFGD IKWNF+KFLVDK+GNVV+R+APTTSPLSIEKD+KKLL
Sbjct:  103 SQCGLTNSNYTELAQLYEKYKGHGFEILAFPCNQFGNQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDKAAPVYKFLKSSKGGLFGDGIKWNFAKFLVDKDGNVVDRFAPTTSPLSIEKDVKKLL 228          
BLAST of FC871409 vs. ExPASy Swiss-Prot
Match: GPX4_SPIOL (Probable phospholipid hydroperoxide glutathione peroxidase OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 9.013e-59
Identity = 103/126 (81.75%), Postives = 117/126 (92.86%), Query Frame = 1
Query:    1 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 378
            SQCGLTNSNYTE+++LY+KY+  GLEILAFPCNQFG QEPG NE++ EFACTRFKAE+PIFDKVDVNG NAAP+YK LKSSKGGLFGD +KWNF+KFLVDK+GNVV+RYAPTTSP SIEKD+KKLL
Sbjct:   42 SQCGLTNSNYTEMTELYEKYRELGLEILAFPCNQFGNQEPGSNEEVLEFACTRFKAEYPIFDKVDVNGSNAAPIYKFLKSSKGGLFGDGLKWNFTKFLVDKDGNVVDRYAPTTSPKSIEKDVKKLL 167          
BLAST of FC871409 vs. ExPASy Swiss-Prot
Match: GPX4_NICSY (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 9.013e-59
Identity = 105/126 (83.33%), Postives = 116/126 (92.06%), Query Frame = 1
Query:    1 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 378
            SQCGLTNSNYT+L+++Y KYK+QGLEILAFPCNQFG QEPG  E+IQ   CTRFKAE+PIFDKVDVNGDNAAPLYK LKSSKGG FGDSIKWNFSKFLVDKEGNVV+RY+PTT+P S+EKDIKKLL
Sbjct:   41 SQCGLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 166          
BLAST of FC871409 vs. ExPASy Swiss-Prot
Match: GPX4_TOBAC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.537e-58
Identity = 104/126 (82.54%), Postives = 116/126 (92.06%), Query Frame = 1
Query:    1 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 378
            SQCGLTNSNYT+++++Y KYK+QGLEILAFPCNQFG QEPG  E+IQ   CTRFKAE+PIFDKVDVNGDNAAPLYK LKSSKGG FGDSIKWNFSKFLVDKEGNVV+RY+PTT+P S+EKDIKKLL
Sbjct:   41 SQCGLTNSNYTDMTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 166          
BLAST of FC871409 vs. ExPASy Swiss-Prot
Match: GPX4_SOLLC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Solanum lycopersicum GN=GPXle-1 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 9.965e-58
Identity = 102/126 (80.95%), Postives = 116/126 (92.06%), Query Frame = 1
Query:    1 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 378
            SQCGLTNSNYT++++LY KYK+QGLEILAFPCNQFG QEPG+ E IQ+  CTRFKAE+PIFDKVDVNGDNAAPLY+ LKSSKGG FGD IKWNFSKFL+DKEG+VV+RY+PTTSP S+EKDIKKLL
Sbjct:   41 SQCGLTNSNYTDMTELYKKYKDQGLEILAFPCNQFGGQEPGNIEDIQQMVCTRFKAEYPIFDKVDVNGDNAAPLYRFLKSSKGGFFGDGIKWNFSKFLIDKEGHVVDRYSPTTSPASMEKDIKKLL 166          
BLAST of FC871409 vs. ExPASy Swiss-Prot
Match: GPX4_GOSHI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.700e-57
Identity = 105/127 (82.68%), Postives = 115/127 (90.55%), Query Frame = 1
Query:    1 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD-NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 378
            SQCGLTNSNYT+L+++Y KYK+QGLEILAFPCNQFG QEPG   E IQ   CTRFKAE+PIFDKVDVNGDNAAPLYK LKSSKGG FGDSIKWNFSKFLVDKEGNVV+RY+PTT+P S+EKDIKKLL
Sbjct:   41 SQCGLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEESIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLL 167          
BLAST of FC871409 vs. ExPASy Swiss-Prot
Match: GPX4_HELAN (Probable phospholipid hydroperoxide glutathione peroxidase OS=Helianthus annuus GN=GPXHA-2 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.078e-55
Identity = 101/126 (80.16%), Postives = 110/126 (87.30%), Query Frame = 1
Query:    1 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 378
            SQCG TNSNY EL+ LY KYK+QG EILAFPCNQFG QEPG NE+IQ FACTRFKAE+P+F KV+VNG  A PLYK LKSSKGG  GDSIKWNF+KFLVD+EG VV+RYAPTTSPLSIEKDIKKLL
Sbjct:   52 SQCGFTNSNYPELTTLYQKYKDQGFEILAFPCNQFGGQEPGSNEEIQVFACTRFKAEYPVFSKVNVNGKEADPLYKFLKSSKGGFLGDSIKWNFTKFLVDREGKVVDRYAPTTSPLSIEKDIKKLL 177          
BLAST of FC871409 vs. ExPASy Swiss-Prot
Match: GPX1_PEA (Phospholipid hydroperoxide glutathione peroxidase, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.540e-53
Identity = 95/126 (75.40%), Postives = 109/126 (86.51%), Query Frame = 1
Query:    1 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 378
            S+CGLT+SNYTELS LY+ +KN+GLE+LAFPCNQFG QEPG NE+I++FACT+FKAEFPIFDKVDVNG   AP+Y+ LKSS GG FGD +KWNF KFLVDK G VVERY PTTSP  IEKDI+KLL
Sbjct:  109 SRCGLTSSNYTELSHLYENFKNKGLEVLAFPCNQFGMQEPGSNEEIKQFACTKFKAEFPIFDKVDVNGPFTAPVYQFLKSSSGGFFGDIVKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234          
The following BLAST results are available for this feature:
BLAST of FC871409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
GPX4_CITSI1.026e-70100.00Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_MESCR4.779e-6083.59Probable phospholipid hydroperoxide glutathione pe... [more]
GPX6_ARATH1.816e-5984.13Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_SPIOL9.013e-5981.75Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_NICSY9.013e-5983.33Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_TOBAC1.537e-5882.54Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_SOLLC9.965e-5880.95Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_GOSHI1.700e-5782.68Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_HELAN2.078e-5580.16Probable phospholipid hydroperoxide glutathione pe... [more]
GPX1_PEA2.540e-5375.40Phospholipid hydroperoxide glutathione peroxidase,... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CH06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871409 ID=FC871409; Name=FC871409; organism=Citrus sinensis; type=EST; length=634bp
TCACAGTGTGGCTTGACCAATTCAAACTACACTGAGCTGAGTCAGTTGTA
CGACAAGTACAAGAATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAATC
AGTTTGGAGCTCAAGAGCCAGGAGACAATGAACAGATTCAAGAATTTGCA
TGCACTCGCTTTAAGGCTGAGTTTCCCATATTTGATAAGGTTGATGTTAA
TGGTGATAATGCTGCTCCTTTATACAAGCATCTGAAATCCAGCAAAGGTG
GACTTTTTGGAGACAGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGGAT
AAGGAGGGGAATGTTGTTGAGCGTTATGCCCCCACCACTAGCCCTCTGAG
CATTGAGAAGGATATAAAGAAACTTCTGGAGACTGCTTAACCGCTGCTAC
AACTTGCATGATCAGCTTCTTGCTAATAAAACTAGAGTATCATGCTGTAG
AAGCACTCTGGTGGAAATATATGTTTAGCTTTGTCTCAATATCTGTAGAC
ATATAATGAAGTTTCCTAATGTCGAAGTAAATTCAGTTGATAAGTGCTTG
GTTTGTATGTAATGAATGTTCCCAGTTTTTGTAATTCAAAATAAAAGGTG
CTTGGTGAGACTCTACAAAAAAAAAAAAAAAAAA
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