FC871399

Overview
NameFC871399
Unique NameFC871399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1793 contig Csv1_Contig1793:384..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871399 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.677e-23
Identity = 48/56 (85.71%), Postives = 55/56 (98.21%), Query Frame = 3
Query:    3 GSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTA 170
            GS+IQ+ALAEWTGQ+TVPNVFIG KHIGGCD+TTALHREGKL+PLLTEAGA+AKT+
Sbjct:   51 GSEIQAALAEWTGQRTVPNVFIGRKHIGGCDATTALHREGKLLPLLTEAGAIAKTS 106          
BLAST of FC871399 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.791e-21
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = 3
Query:    3 GSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 158
            GSD+Q+ALAEWTGQ+TVPNVFIGGKHIGGCD TT +H+EGKL+PLLTEAGAV
Sbjct:   51 GSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIPLLTEAGAV 102          
BLAST of FC871399 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.385e-20
Identity = 45/56 (80.36%), Postives = 51/56 (91.07%), Query Frame = 3
Query:    3 GSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTA 170
            GS++QSALAEWTGQ+TVPNVFI GKHIGGCD T AL+ EGKLVPLLTEAGA+A +A
Sbjct:   51 GSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTEAGAIASSA 106          
BLAST of FC871399 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.385e-20
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = 3
Query:    3 GSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 158
            GS+IQ+ALAEWTGQ+TVPNVFIGGKHIGGCDSTTA H +G+LVPLLTEAGAV
Sbjct:   51 GSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVPLLTEAGAV 102          
BLAST of FC871399 vs. ExPASy Swiss-Prot
Match: GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.086e-20
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = 3
Query:    3 GSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVA-KTA 170
            GS IQS LAEWTGQ+TVPNVFIGG HIGGCD+T+ LH++GKLVPLLTEAGA+A KTA
Sbjct:   51 GSQIQSGLAEWTGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVPLLTEAGAIAGKTA 107          
BLAST of FC871399 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.405e-18
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 3
Query:    3 GSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVA 161
            GS++QSALA+WTGQ+TVP VFI GKHIGGCD T A+H+ G LVPLLTEAGA+A
Sbjct:   77 GSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVPLLTEAGAIA 129          
BLAST of FC871399 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.070e-16
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 3
Query:    3 GSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTAA 173
            G +IQSAL+EWTGQ TVPNVFI G HIGGCD     +++GKLVPLLTEAGA+A  ++
Sbjct:   67 GGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVPLLTEAGAIADNSS 123          
BLAST of FC871399 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.535e-11
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 3
Query:    3 GSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAG 152
            GS++QSA  + +G +TVP VFI  K IGGCD+TT LH +GKL+PLL EAG
Sbjct:   49 GSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQGKLIPLLQEAG 98          
BLAST of FC871399 vs. ExPASy Swiss-Prot
Match: GRS12_ARATH (Monothiol glutaredoxin-S12, chloroplastic OS=Arabidopsis thaliana GN=GRXS12 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 3
Query:    3 GSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEA 149
            GS +Q+ L + TGQ TVPNVFIGGKHIGGC  T  LH +G+L  +L EA
Sbjct:  124 GSQLQNVLEKITGQYTVPNVFIGGKHIGGCSDTLQLHNKGELEAILAEA 172          
BLAST of FC871399 vs. ExPASy Swiss-Prot
Match: GRS10_ORYSJ (Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. japonica GN=GRXS10 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 3
Query:    3 GSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTE 146
            G  +Q  L   TGQ TVPNVFIGGKHIGGC  T  LHR+G+L  +L+E
Sbjct:  109 GPQLQKVLERLTGQSTVPNVFIGGKHIGGCTDTVKLHRKGELATMLSE 156          
The following BLAST results are available for this feature:
BLAST of FC871399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
GLRX_SOLLC8.677e-2385.71Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1[more]
GLRX_VERFO2.791e-2184.62Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GRXC6_ORYSJ1.385e-2080.36Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GLRX_RICCO1.385e-2086.54Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GRXC2_ARATH3.086e-2080.70Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 P... [more]
GRXC4_ORYSJ8.405e-1875.47Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub... [more]
GRXC1_ARATH2.070e-1666.67Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
GLRX_DICDI1.535e-1162.00Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
GRS12_ARATH9.951e-1161.22Monothiol glutaredoxin-S12, chloroplastic OS=Arabi... [more]
GRS10_ORYSJ9.951e-1160.42Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2CF12FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871399 ID=FC871399; Name=FC871399; organism=Citrus sinensis; type=EST; length=425bp
ATGGAAGTGACATTCAATCAGCTCTAGCTGAGTGGACTGGACAGAAAACT
GTTCCAAATGTCTTCATCGGAGGGAAACACATTGGTGGCTGCGATTCAAC
TACTGCACTGCACAGGGAAGGGAAGCTGGTTCCTCTGCTCACTGAAGCTG
GAGCTGTTGCCAAGACAGCTGCCTAAGGGATGGCTATTCTCTGCCTGTTT
ATGCTAGTAATAAATAAACAATGTGTTGGTAGTGCTTAATCTGTCTGAAT
TAAATATGAAATTATGCTTATTTGAGTAATTTCCAATGCACTTTTTTGTT
CAGTTTCTGTTTTATGTTGAAATCTGTATGAATTTTATCAGATTTTCCAT
CTACTATATCCATGTAGAGTCATTTCTGCTGTAAATTATTTCAGTGTCCT
TGCTATAAAAAAAAAAAAAAAAAAA
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