FC871396

Overview
NameFC871396
Unique NameFC871396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length416
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC871396_ssr238 microsatellite FC871396_ssr238:238..249. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13714 contig Csv1_Contig13714:825..1240. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871396 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.152e-11
Identity = 36/50 (72.00%), Postives = 38/50 (76.00%), Query Frame = 2 
Query:    2 SSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 151
            SSGKF+RRFRLP+NAKVEQVKASMENGVLTVT            AIEISG
Sbjct:  112 SSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161
[Close]
BLAST of FC871396 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.378e-11
Identity = 35/50 (70.00%), Postives = 37/50 (74.00%), Query Frame = 2 
Query:    2 SSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 151
            SSG F+RRFRLP+NAKVEQVKASMENGVLTVT            AIEISG
Sbjct:  104 SSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153
[Close]
BLAST of FC871396 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.378e-11
Identity = 35/50 (70.00%), Postives = 37/50 (74.00%), Query Frame = 2 
Query:    2 SSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 151
            SSGKF+R FRLPDNAKV+QVKASMENGVLTVT            AIEISG
Sbjct:   25 SSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74
[Close]
BLAST of FC871396 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.468e-11
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 2 
Query:    2 SSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 151
            SSGKFLRRFRLPDNAK EQ+KASMENGVLTVT            +I+ISG
Sbjct:  112 SSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161
[Close]
BLAST of FC871396 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.468e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 2 
Query:    2 SSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 151
            SSG+F+RRFRLP+NAKV+QVKASMENGVLTVT            AIEISG
Sbjct:  100 SSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149
The following BLAST results are available for this feature:
BLAST of FC871396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HSP16_SOYBN1.152e-1172.0018.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP13_SOYBN4.378e-1170.0017.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_SOYBN4.378e-1170.00Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS17A_ORYSJ7.468e-1168.0017.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16C_ORYSJ7.468e-1168.0016.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2CF08FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871396 ID=FC871396; Name=FC871396; organism=Citrus sinensis; type=EST; length=416bp
GAGCAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGG
TGGAACAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTCACCGTT
CCTAAACAGGAGGAGAAGAAACCTGAAGTTAAGGCTATTGAGATCTCTGG
CTAAGTGATAACTGTAAATGTTTTCAAGATAGTGTCTTTGGTTTGCTAAT
AAATTTGGTACGAAAGCACAGCCCTTGTGTGTTTGTATGTGTGTGTGTGT
TTGTTTTCTTCCCTTCCCCCTGTTTAATTTGATGTGATTATGTTTGTGTG
TTTGCAAGAGCTTCAGGAGCCAGTCTCATGCGTTGTAACTAGTTTTTTAA
ATGATAAAAAAGTGTGATGCAATAAAATATATTTTGGAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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