FC871393

Overview
NameFC871393
Unique NameFC871393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6610 contig Csv1_Contig6610:1..758. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
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BLAST of FC871393 vs. ExPASy Swiss-Prot
Match: YHCG_ECOLI (Uncharacterized protein yhcG OS=Escherichia coli (strain K12) GN=yhcG PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13
Identity = 62/231 (26.84%), Postives = 101/231 (43.72%), Query Frame = 2 
Query:  170 VSQSRYQAARSVNSELIRLYHYICSEILNRQE----RYGWGAKVIDNLSRDLHSAFPEMKGFGSRNLKYMKRFAEEYRDTEFVQQVAAQLPWFHI----------------------------VVLLDKVKDNQHRIFYIKKTIENGWSRSTLIRQIELELHKR---QGQAITNFQNKLTSSQSDLAHYTLKDPYIFDFLSVGKEAHEREVEKELTKHIEKFLLELGAGFA 757
            V  +R +  RSVN+ +   Y  I   I+  ++    R  +GA++I  LS+DL   +   +GF ++NL+ M+ F   ++  E  Q ++ +L    I                             V L  VK+   R FY K+T+  GWS   L RQI  + ++R           Q    +    L    ++DP++ +FL +  E  E + E+ L  H+  F+LELG  FA
Sbjct:   23 VDSARTETVRSVNALMTATYQEIGRRIVEFEQGGEARAAYGAQLIKRLSKDLCLRYK--RGFSAKNLRQMRLFYLFFQHVEIHQTMSGELTPLGIPQTPSAEFPSAKIWQTLSAKSFPLPRSTYVRLLSVKNADARSFYEKETLRCGWSVRQLERQIATQFYERTLLSHDKSAMLQQHAPAETHILPQQAIRDPFVLEFLELKDEYSESDFEEALINHLMDFMLELGDDFA 251
The following BLAST results are available for this feature:
BLAST of FC871393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YHCG_ECOLI1.221e-1326.84Uncharacterized protein yhcG OS=Escherichia coli (... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2CF05FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871393 ID=FC871393; Name=FC871393; organism=Citrus sinensis; type=EST; length=758bp
GAGGCCTTAATATTAAAATTATTAGTATCAAAAGTTGGTTTTCTGTGTAT
TATAATCAAGCTAGAGTATAGCACTAACTTAATTTATAATATAATCAATG
AAAATTTTTATGAGTACTAATATTGTTAATTCAGAATATTTAGAATTTTT
AGAACAACTAAAAATTCGTGTATCTCAAAGTCGCTATCAAGCTGCAAGGT
CAGTAAATAGTGAACTAATAAGACTCTATCATTATATATGCAGTGAAATT
CTTAATAGACAAGAAAGGTATGGTTGGGGTGCTAAAGTAATAGATAATTT
AAGCCGTGATCTACATTCTGCATTCCCTGAAATGAAAGGATTTGGTAGCA
GAAACCTTAAATATATGAAGCGTTTTGCTGAAGAATATAGGGATACAGAA
TTTGTGCAGCAGGTTGCTGCACAATTACCTTGGTTTCATATAGTAGTTCT
ATTAGACAAAGTAAAAGACAATCAACATAGAATTTTTTACATAAAGAAAA
CAATTGAAAATGGTTGGTCACGTAGCACACTAATTAGACAAATCGAACTT
GAATTACATAAAAGACAAGGGCAAGCAATAACAAACTTTCAAAATAAACT
AACTTCTTCCCAATCTGATCTAGCACATTATACACTTAAAGATCCGTATA
TTTTTGATTTTTTAAGTGTAGGTAAAGAAGCACATGAAAGGGAAGTAGAA
AAAGAATTAACTAAGCACATAGAGAAATTTTTACTTGAGCTTGGGGCAGG
CTTTGCTT
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