FC871388

Overview
NameFC871388
Unique NameFC871388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6892 contig Csv1_Contig6892:1..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_SYMTH (Ribosomal RNA small subunit methyltransferase G OS=Symbiobacterium thermophilum GN=rsmG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.970e-23
Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 1 
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R + +G++ + RE+YD+  ARAVAE+R+LAEYCLPL RVGG F+A KG    EE+  +E AV+ +G  L ++  +E     G+R+ V+  K R TPK YPR AG PAK PL
Sbjct:  136 RAEDVGRNPAHRERYDLVTARAVAELRVLAEYCLPLARVGGRFLAMKGPSVGEEILAAEAAVEKLGGRLEEVRELELPDGGGRRSLVLIRKERPTPKAYPRRAGVPAKSPL 246
[Close]
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACCN (Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rsmG PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.668e-22
Identity = 49/111 (44.14%), Postives = 73/111 (65.77%), Query Frame = 1 
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N + AV+++G  L ++ + +      +R  ++  K R+TPKKYPR  GTP K+P+
Sbjct:  127 RAETFGKKEHVRESYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGKYAVEVLGGQLEEVSTFQLPFEESERNILLIKKKRKTPKKYPRKPGTPNKLPI 237
[Close]
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACCZ (Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain ZK / E33L) GN=rsmG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.178e-22
Identity = 48/111 (43.24%), Postives = 74/111 (66.67%), Query Frame = 1 
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG   +EE++N + A++++G  L ++ + +      +R  ++  K R+TPKKYPR  GTP K+P+
Sbjct:  127 RAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAAKEEIENGKYALEVLGGDLKEMSTFQLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237
[Close]
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACCR (Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rsmG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.178e-22
Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 1 
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N + A++++G  L ++ + +      +R  ++  K R+TPKKYPR  GTP K+P+
Sbjct:  127 RAETFGKKEGVRESYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGKYALEVLGGELKEMSTFQLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237
[Close]
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACC4 (Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain B4264) GN=rsmG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.178e-22
Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 1 
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N + A++++G  L ++ + +      +R  ++  K R+TPKKYPR  GTP K+P+
Sbjct:  127 RAETFGKKEGVRESYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGKYALEVLGGELKEMSTFQLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237
[Close]
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACC2 (Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain G9842) GN=rsmG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.178e-22
Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 1 
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N + A++++G  L ++ + +      +R  ++  K R+TPKKYPR  GTP K+P+
Sbjct:  127 RAETFGKKEGVRESYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGKYALEVLGGELKEMSTFQLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237
[Close]
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACWK (Ribosomal RNA small subunit methyltransferase G OS=Bacillus weihenstephanensis (strain KBAB4) GN=rsmG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.845e-22
Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 1 
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N + A++++G  L ++ + +      +R  ++  K R+TPKKYPR  GTP K+P+
Sbjct:  127 RAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGKYALEVLGGELKEMSTFQLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237
[Close]
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACHK (Ribosomal RNA small subunit methyltransferase G OS=Bacillus thuringiensis subsp. konkukian GN=rsmG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.845e-22
Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 1 
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N + A++++G  L ++ + +      +R  ++  K R+TPKKYPR  GTP K+P+
Sbjct:  127 RAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGKYALEVLGGDLKEMSTFQLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237
[Close]
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACCQ (Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain Q1) GN=rsmG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.845e-22
Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 1 
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N + A++++G  L ++ + +      +R  ++  K R+TPKKYPR  GTP K+P+
Sbjct:  127 RAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGKYALEVLGGDLKEMSTFQLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237
[Close]
BLAST of FC871388 vs. ExPASy Swiss-Prot
Match: RSMG_BACC7 (Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain AH187) GN=rsmG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.845e-22
Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 1 
Query:   40 RGQTLGKDVSFREQYDVAVARAVAEMRILAEYCLPLVRVGGLFVAAKGHDPQEEVKNSERAVQLMGASLLQLCSVESQSPFGQRTAVVCLKSRRTPKKYPRDAGTPAKVPL 372
            R +T GK    RE YD+ +ARAVA + +L+E CLPLV+VGG F+A KG    EE++N + A++++G  L ++ + +      +R  ++  K R+TPKKYPR  GTP K+P+
Sbjct:  127 RAETFGKKEGVREAYDIVMARAVARLSVLSELCLPLVKVGGTFIAMKGAAANEEIENGKYALEVLGGDLKEMSTFQLPFEESERNILLIEKKRKTPKKYPRKPGTPNKLPI 237
The following BLAST results are available for this feature:
BLAST of FC871388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
RSMG_SYMTH1.970e-2349.55Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BACCN1.668e-2244.14Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BACCZ2.178e-2243.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BACCR2.178e-2243.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BACC42.178e-2243.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BACC22.178e-2243.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BACWK2.845e-2243.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BACHK2.845e-2243.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BACCQ2.845e-2243.24Ribosomal RNA small subunit methyltransferase G OS... [more]
RSMG_BACC72.845e-2243.24Ribosomal RNA small subunit methyltransferase G OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CE12FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871388 ID=FC871388; Name=FC871388; organism=Citrus sinensis; type=EST; length=616bp
CTCAGTTGTTAAATGTTCAAATTGTAAGGGGAAGAGCTGAGAGGACAGAC
TTTGGGGAAGGATGTATCCTTCAGAGAACAATATGATGTAGCGGTTGCCA
GAGCAGTAGCAGAAATGAGAATTTTAGCTGAGTATTGTCTTCCTCTGGTT
CGTGTTGGAGGCTTATTTGTCGCTGCAAAGGGTCATGATCCTCAGGAAGA
AGTCAAAAATTCAGAAAGAGCAGTTCAATTGATGGGTGCTTCCTTATTGC
AACTGTGCTCGGTGGAATCTCAGAGCCCATTTGGTCAACGAACTGCTGTT
GTCTGTTTAAAAAGTCGCCGTACCCCAAAAAAGTATCCCCGTGATGCAGG
GACACCAGCAAAAGTGCCACTATGACTGAATTGGATACCATCTCTACCAT
TTGTATTATTTTGTTCTGCTTCCTGCACCCCACCACTGTTCTGTACTCTG
ATTTTGACCATCTACAATTAAGAATATTGGTGGTTACAAAGAAGCTTAAT
CTTTGATTCTTCTGTACTCGCTGTATTCTATCCTTTTTATGAAAATATAT
AGTTATTGGTTTGAGCTGTTCAATAAAATTTTCTGGAAATTTGCGTCAAA
AAAAAAAAAAAAAAAA
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