FC871369

Overview
NameFC871369
Unique NameFC871369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC871369_ssr391 microsatellite FC871369_ssr391:391..402. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7505 contig Csv1_Contig7505:48..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS24_ARATH (40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.765e-92
Identity = 164/180 (91.11%), Postives = 175/180 (97.22%), Query Frame = 3 
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            KWVPVTKLGRLV+EGKI  +EQIYLHSLP+KEYQIID L+G  LKDEVMKIMPVQKQTRAGQRTRFKAF+VVGD++GHVGLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK
Sbjct:   44 KWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 223
[Close]
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS23_ARATH (40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2)

HSP 1 Score: 333.954 bits (855), Expect = 5.677e-91
Identity = 165/180 (91.67%), Postives = 172/180 (95.56%), Query Frame = 3 
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            KWVPVTKLGRLV  G I+ +EQIYLHSLP+KEYQIID LIG  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK
Sbjct:   53 KWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 232
[Close]
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS22_ARATH (40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 5.677e-91
Identity = 165/180 (91.67%), Postives = 172/180 (95.56%), Query Frame = 3 
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            KWVPVTKLGRLV + KI  LEQIYLHSLP+KEYQIID L+G  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK
Sbjct:   52 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 231
[Close]
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS21_ARATH (40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2)

HSP 1 Score: 333.954 bits (855), Expect = 5.677e-91
Identity = 165/180 (91.67%), Postives = 172/180 (95.56%), Query Frame = 3 
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            KWVPVTKLGRLV + KI  LEQIYLHSLP+KEYQIID L+G  LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK
Sbjct:   52 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 231
[Close]
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS2_DROME (40S ribosomal protein S2 OS=Drosophila melanogaster GN=sop PE=1 SV=2)

HSP 1 Score: 309.301 bits (791), Expect = 1.498e-83
Identity = 149/202 (73.76%), Postives = 173/202 (85.64%), Query Frame = 3 
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKGNL*VVVE-------DIWLPYP 770
            +WVPVTKLGRLVREGKI+SLE+IYL+SLPIKE++IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSV+VR++PAPRG GIV+A VPKK+L  AGI+D +TS+RGST TLGNF K     + +       D+W   P
Sbjct:   42 EWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMP 243
[Close]
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS2_ICTPU (40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.041e-81
Identity = 143/180 (79.44%), Postives = 163/180 (90.56%), Query Frame = 3 
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            +WVPVTKLGRLV++ KI+SLE+IYL+SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS+IPVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGIDD +TS+RG T TLGNF K
Sbjct:   44 EWVPVTKLGRLVKDMKIKSLEEIYLYSLPIKESEIIDFFLGSALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAK 223

HSP 2 Score: 25.7942 bits (55), Expect = 3.041e-81
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 1 
Query:  709 LETLSRATFEWLLKTYGFLTP 771
            L   ++ATF+ + KTY +LTP
Sbjct:  218 LGNFAKATFDAISKTYSYLTP 238
[Close]
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS2_RAT (40S ribosomal protein S2 OS=Rattus norvegicus GN=Rps2 PE=1 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.148e-80
Identity = 141/180 (78.33%), Postives = 162/180 (90.00%), Query Frame = 3 
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGIDD +TS+RG T TLGNF K
Sbjct:   59 EWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAK 238

HSP 2 Score: 25.7942 bits (55), Expect = 1.148e-80
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 1 
Query:  709 LETLSRATFEWLLKTYGFLTP 771
            L   ++ATF+ + KTY +LTP
Sbjct:  233 LGNFAKATFDAISKTYSYLTP 253
[Close]
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS2_MOUSE (40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3)

HSP 1 Score: 296.204 bits (757), Expect = 1.148e-80
Identity = 141/180 (78.33%), Postives = 162/180 (90.00%), Query Frame = 3 
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGIDD +TS+RG T TLGNF K
Sbjct:   59 EWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAK 238

HSP 2 Score: 25.7942 bits (55), Expect = 1.148e-80
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 1 
Query:  709 LETLSRATFEWLLKTYGFLTP 771
            L   ++ATF+ + KTY +LTP
Sbjct:  233 LGNFAKATFDAISKTYSYLTP 253
[Close]
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS2_HUMAN (40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2)

HSP 1 Score: 295.434 bits (755), Expect = 1.953e-80
Identity = 141/180 (78.33%), Postives = 162/180 (90.00%), Query Frame = 3 
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGIDD +TS+RG T TLGNF K
Sbjct:   59 EWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAK 238

HSP 2 Score: 25.7942 bits (55), Expect = 1.953e-80
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 1 
Query:  709 LETLSRATFEWLLKTYGFLTP 771
            L   ++ATF+ + KTY +LTP
Sbjct:  233 LGNFAKATFDAISKTYSYLTP 253
[Close]
BLAST of FC871369 vs. ExPASy Swiss-Prot
Match: RS2_BOVIN (40S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=2 SV=2)

HSP 1 Score: 295.434 bits (755), Expect = 1.953e-80
Identity = 141/180 (78.33%), Postives = 162/180 (90.00%), Query Frame = 3 
Query:  186 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVK 725
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGIDD +TS+RG T TLGNF K
Sbjct:   59 EWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAK 238

HSP 2 Score: 25.7942 bits (55), Expect = 1.953e-80
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 1 
Query:  709 LETLSRATFEWLLKTYGFLTP 771
            L   ++ATF+ + KTY +LTP
Sbjct:  233 LGNFAKATFDAISKTYSYLTP 253
The following BLAST results are available for this feature:
BLAST of FC871369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
RS24_ARATH1.765e-9291.1140S ribosomal protein S2-4 OS=Arabidopsis thaliana... [more]
RS23_ARATH5.677e-9191.6740S ribosomal protein S2-3 OS=Arabidopsis thaliana... [more]
RS22_ARATH5.677e-9191.6740S ribosomal protein S2-2 OS=Arabidopsis thaliana... [more]
RS21_ARATH5.677e-9191.6740S ribosomal protein S2-1 OS=Arabidopsis thaliana... [more]
RS2_DROME1.498e-8373.7640S ribosomal protein S2 OS=Drosophila melanogaste... [more]
RS2_ICTPU3.041e-8179.4440S ribosomal protein S2 OS=Ictalurus punctatus GN... [more]
RS2_RAT1.148e-8078.3340S ribosomal protein S2 OS=Rattus norvegicus GN=R... [more]
RS2_MOUSE1.148e-8078.3340S ribosomal protein S2 OS=Mus musculus GN=Rps2 P... [more]
RS2_HUMAN1.953e-8078.3340S ribosomal protein S2 OS=Homo sapiens GN=RPS2 P... [more]
RS2_BOVIN1.953e-8078.3340S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CD03FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871369 ID=FC871369; Name=FC871369; organism=Citrus sinensis; type=EST; length=773bp
CCTCGCATTTTTCTTTCTCCCAAAGCCCAAACCCTAGCTTCAATCCCTAA
ACACACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATT
CGGACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTG
GCCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTC
ACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCA
AATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGC
TTATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAG
AAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGT
CGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGG
TTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCAGTGATT
CCGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGT
GCCGTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTC
CGGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAAGAAGGTG
CTGCAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGAC
CAAGACTCTTGGAAACTTTGTCAAGGGCAACCTTTGAGTGGTTGTTGAAG
ACATATGGCTTCCTTACCCCTGA
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