EY679001

Overview
NameEY679001
Unique NameEY679001
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679001 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.307e-54
Identity = 77/128 (60.16%), Postives = 103/128 (80.47%), Query Frame = 2
Query:    2 VDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNQE 385
            VD SI K+AT+ +    +D YIFRP+   +  V K A EP NPSELPK+++GLRK +KSYPL+ITKVEESGEHTI GTGE+Y+D ++ DLR LYSE+E++V+DPV  FCET V++SS+KCF++TPN++
Sbjct:  568 VDNSISKTATIVSDNLKDDPYIFRPIAHMSESVFKVAVEPHNPSELPKLLDGLRKTNKSYPLSITKVEESGEHTIFGTGEMYMDCLLYDLRTLYSEIEIRVSDPVARFCETAVDTSSIKCFSDTPNKK 695          

HSP 2 Score: 68.9366 bits (167), Expect = 1.307e-54
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 3
Query:  375 PTKKNKITMIAEPLERGLAEDIENGVVSIELGV*RRLVISLKQKYDWGFYFEHDSIWAFGPEKQGPNFLLDE 590
            P KKN+ITM+ EPLE+G++ DIENG V+I     +R+    ++ YDW       SIWAFGP+ +G N L D+
Sbjct:  692 PNKKNRITMVVEPLEKGISNDIENGKVNINWPQ-KRISEFFQKNYDWDLLASR-SIWAFGPDDRGTNILRDD 761          
BLAST of EY679001 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.904e-48
Identity = 111/218 (50.92%), Postives = 146/218 (66.97%), Query Frame = 2
Query:    2 VDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNQEK*NNHDCRTIGERTCRGY---*ERRCKY*IGSLKTLGDFFKTKI*LGILL*ARFYMGIWT*KAGTKFFIR*TLSPTKIEKKLCLMAVKDS 646
            VD  I+K+AT+     +E+  IFRPL+FNT  V+K A EP+NPSELPKM++GLRK++KSYP   TKVEESGEH ILGTGELYLD +M DLR++YSE+++KVADPVV+FCETVVE+SS+KCFAETPN++    +    I E   +G     E        + K LG+FF+TK    +L  AR          G    +  TL P++++K L L +VKDS
Sbjct:  554 VDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETSSLKCFAETPNKK----NKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLA-ARSIWAFGPDATGPNILVDDTL-PSEVDKAL-LGSVKDS 764          
BLAST of EY679001 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.904e-48
Identity = 111/218 (50.92%), Postives = 146/218 (66.97%), Query Frame = 2
Query:    2 VDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNQEK*NNHDCRTIGERTCRGY---*ERRCKY*IGSLKTLGDFFKTKI*LGILL*ARFYMGIWT*KAGTKFFIR*TLSPTKIEKKLCLMAVKDS 646
            VD  I+K+AT+     +E+  IFRPL+FNT  V+K A EP+NPSELPKM++GLRK++KSYP   TKVEESGEH ILGTGELYLD +M DLR++YSE+++KVADPVV+FCETVVE+SS+KCFAETPN++    +    I E   +G     E        + K LG+FF+TK    +L  AR          G    +  TL P++++K L L +VKDS
Sbjct:  555 VDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETSSLKCFAETPNKK----NKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLA-ARSIWAFGPDATGPNILVDDTL-PSEVDKAL-LGSVKDS 765          
BLAST of EY679001 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.904e-48
Identity = 111/218 (50.92%), Postives = 146/218 (66.97%), Query Frame = 2
Query:    2 VDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNQEK*NNHDCRTIGERTCRGY---*ERRCKY*IGSLKTLGDFFKTKI*LGILL*ARFYMGIWT*KAGTKFFIR*TLSPTKIEKKLCLMAVKDS 646
            VD  I+K+AT+     +E+  IFRPL+FNT  V+K A EP+NPSELPKM++GLRK++KSYP   TKVEESGEH ILGTGELYLD +M DLR++YSE+++KVADPVV+FCETVVE+SS+KCFAETPN++    +    I E   +G     E        + K LG+FF+TK    +L  AR          G    +  TL P++++K L L +VKDS
Sbjct:  555 VDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETSSLKCFAETPNKK----NKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLA-ARSIWAFGPDATGPNILVDDTL-PSEVDKAL-LGSVKDS 765          
BLAST of EY679001 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.711e-48
Identity = 111/218 (50.92%), Postives = 146/218 (66.97%), Query Frame = 2
Query:    2 VDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNQEK*NNHDCRTIGERTCRGY---*ERRCKY*IGSLKTLGDFFKTKI*LGILL*ARFYMGIWT*KAGTKFFIR*TLSPTKIEKKLCLMAVKDS 646
            VD  I+K+AT+     +E+  IFRPL+FNT  V+K A EP+NPSELPKM++GLRK++KSYP   TKVEESGEH ILGTGELYLD +M DLR++YSE+++KVADPVV+FCETVVE+SS+KCFAETPN++    +    I E   +G     E        + K LG+FF+TK    +L  AR          G    +  TL P++++K L L +VKDS
Sbjct:  555 VDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETSSLKCFAETPNKK----NKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLA-ARSIWAFGPDATGPNILVDDTL-PSEVDKAL-LGSVKDS 765          
BLAST of EY679001 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.827e-47
Identity = 110/218 (50.46%), Postives = 145/218 (66.51%), Query Frame = 2
Query:    2 VDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNQEK*NNHDCRTIGERTCRGY---*ERRCKY*IGSLKTLGDFFKTKI*LGILL*ARFYMGIWT*KAGTKFFIR*TLSPTKIEKKLCLMAVKDS 646
            VD  I+K+AT+     +E+  IFRPL+FNT  V+K A EP+NPSELPKM++GLRK++KSYP   TKVEESGEH ILGTGELYLD +M DL ++YSE+++KVADPVV+FCETVVE+SS+KCFAETPN++    +    I E   +G     E        + K LG+FF+TK    +L  AR          G    +  TL P++++K L L +VKDS
Sbjct:  555 VDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLPKMYSEIDIKVADPVVTFCETVVETSSLKCFAETPNKK----NKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLA-ARSIWAFGPDATGPNILVDDTL-PSEVDKAL-LGSVKDS 765          
BLAST of EY679001 vs. ExPASy Swiss-Prot
Match: EF2_CHICK (Elongation factor 2 OS=Gallus gallus GN=EEF2 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.021e-34
Identity = 54/127 (42.52%), Postives = 89/127 (70.08%), Query Frame = 2
Query:    2 VDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNQ 382
            VD  ++K+ T+   E+  ++   R ++F+  PVV+ A E  NP++LPK+VEGL++++KS P+    +EESGEH I G GEL+L+  +KDL E ++ + +K +DPVVS+ ETV E S++ C +++PN+
Sbjct:  475 VDQFLVKTGTITTFEHAHNM---RVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVMCLSKSPNK 598          

HSP 2 Score: 56.225 bits (134), Expect = 1.021e-34
Identity = 33/75 (44.00%), Postives = 41/75 (54.67%), Query Frame = 3
Query:  363 LLKLPTKKNKITMIAEPLERGLAEDIENGVVSIELGV*RRLVISLKQKYDWGFYFEHDSIWAFGPEKQGPNFLLD 587
            L K P K N++ M A P   GLAEDI+ G VS    + +R    L +KY+W    E   IW FGP+  GPN L D
Sbjct:  592 LSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQR-ARYLAEKYEWD-VTEARKIWCFGPDGTGPNILTD 664          
BLAST of EY679001 vs. ExPASy Swiss-Prot
Match: EF2_DROME (Elongation factor 2 OS=Drosophila melanogaster GN=Ef2b PE=1 SV=4)

HSP 1 Score: 112.464 bits (280), Expect = 1.022e-34
Identity = 54/127 (42.52%), Postives = 87/127 (68.50%), Query Frame = 2
Query:    2 VDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNQ 382
            VD  ++K+ T+   +   D +  + ++F+  PVV+ A EP NP++LPK+VEGL++++KS P+    +EESGEH I G GEL+L+  +KDL E ++ + +K +DPVVS+ ETV E S   C +++PN+
Sbjct:  461 VDQFLVKTGTITTFK---DAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRETVSEESDQMCLSKSPNK 584          

HSP 2 Score: 56.225 bits (134), Expect = 1.022e-34
Identity = 34/75 (45.33%), Postives = 43/75 (57.33%), Query Frame = 3
Query:  363 LLKLPTKKNKITMIAEPLERGLAEDIENGVVSIELGV*RRLVISLKQKYDWGFYFEHDSIWAFGPEKQGPNFLLD 587
            L K P K N++ M A P+  GL EDI+NG VS +     R    L +KYD+    E   IW FGP+  GPNF+LD
Sbjct:  578 LSKSPNKHNRLLMKALPMPDGLPEDIDNGDVSAKDEFKAR-ARYLSEKYDYD-VTEARKIWCFGPDGTGPNFILD 650          
BLAST of EY679001 vs. ExPASy Swiss-Prot
Match: EF2_PONAB (Elongation factor 2 OS=Pongo abelii GN=EEF2 PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 1.330e-34
Identity = 54/127 (42.52%), Postives = 89/127 (70.08%), Query Frame = 2
Query:    2 VDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNQ 382
            VD  ++K+ T+   E+  ++   R ++F+  PVV+ A E  NP++LPK+VEGL++++KS P+    +EESGEH I G GEL+L+  +KDL E ++ + +K +DPVVS+ ETV E S++ C +++PN+
Sbjct:  475 VDQFLVKTGTITTFEHAHNM---RVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNK 598          

HSP 2 Score: 56.225 bits (134), Expect = 1.330e-34
Identity = 33/75 (44.00%), Postives = 41/75 (54.67%), Query Frame = 3
Query:  363 LLKLPTKKNKITMIAEPLERGLAEDIENGVVSIELGV*RRLVISLKQKYDWGFYFEHDSIWAFGPEKQGPNFLLD 587
            L K P K N++ M A P   GLAEDI+ G VS    + +R    L +KY+W    E   IW FGP+  GPN L D
Sbjct:  592 LSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQR-ARYLAEKYEWD-VAEARKIWCFGPDGTGPNILTD 664          
BLAST of EY679001 vs. ExPASy Swiss-Prot
Match: EF2_HUMAN (Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4)

HSP 1 Score: 112.079 bits (279), Expect = 1.330e-34
Identity = 54/127 (42.52%), Postives = 89/127 (70.08%), Query Frame = 2
Query:    2 VDASIMKSATLCNLEYDEDVYIFRPLQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNQ 382
            VD  ++K+ T+   E+  ++   R ++F+  PVV+ A E  NP++LPK+VEGL++++KS P+    +EESGEH I G GEL+L+  +KDL E ++ + +K +DPVVS+ ETV E S++ C +++PN+
Sbjct:  475 VDQFLVKTGTITTFEHAHNM---RVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNK 598          

HSP 2 Score: 56.225 bits (134), Expect = 1.330e-34
Identity = 33/75 (44.00%), Postives = 41/75 (54.67%), Query Frame = 3
Query:  363 LLKLPTKKNKITMIAEPLERGLAEDIENGVVSIELGV*RRLVISLKQKYDWGFYFEHDSIWAFGPEKQGPNFLLD 587
            L K P K N++ M A P   GLAEDI+ G VS    + +R    L +KY+W    E   IW FGP+  GPN L D
Sbjct:  592 LSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQR-ARYLAEKYEWD-VAEARKIWCFGPDGTGPNILTD 664          
The following BLAST results are available for this feature:
BLAST of EY679001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
SN114_SCHPO1.307e-5460.16114 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_MOUSE5.904e-4850.92116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_HUMAN5.904e-4850.92116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_BOVIN5.904e-4850.92116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_CHICK7.711e-4850.92116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_PONAB3.827e-4750.46116 kDa U5 small nuclear ribonucleoprotein compone... [more]
EF2_CHICK1.021e-3442.52Elongation factor 2 OS=Gallus gallus GN=EEF2 PE=1 ... [more]
EF2_DROME1.022e-3442.52Elongation factor 2 OS=Drosophila melanogaster GN=... [more]
EF2_PONAB1.330e-3442.52Elongation factor 2 OS=Pongo abelii GN=EEF2 PE=2 S... [more]
EF2_HUMAN1.330e-3442.52Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-053-H04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679001 ID=EY679001; Name=EY679001; organism=Citrus sinensis; type=EST; length=905bp
TGTGGATGCATCAATTATGAAATCCGCTACTCTCTGTAACCTAGAGTATG
ATGAAGATGTTTACATCTTCCGGCCTCTTCAATTCAATACCCTTCCAGTG
GTGAAAACAGCTACTGAGCCTCTAAACCCCAGTGAGTTGCCTAAAATGGT
GGAGGGTCTTAGGAAAATTAGCAAAAGCTATCCTCTAGCCATCACTAAAG
TTGAGGAGTCTGGAGAGCATACTATATTGGGTACTGGAGAGTTGTACTTG
GATTCAATTATGAAAGATCTGAGAGAGCTCTATTCTGAAGTTGAAGTCAA
GGTGGCAGATCCTGTTGTCTCATTCTGTGAAACAGTGGTGGAGTCTTCAT
CGATGAAGTGTTTTGCTGAAACTCCCAACCAAGAAAAATAAAATAACCAT
GATTGCAGAACCATTGGAGAGAGGACTTGCCGAGGATATTGAGAACGGCG
TTGTAAGTATTGAATTGGGAGTCTGAAGACGCTTGGTGATTTCTTTAAAA
CAAAAATATGACTGGGGATTTTACTTTGAGCACGATTCTATATGGGCATT
TGGACCTGAAAAGCAGGGACCAAATTTTTTATTAGATGAACACTATCCCC
AACGAAAATTGAAAAAAAACTTTGCTTAATGGCTGTAAAGGATTCTCCTT
GTTTCTGGCTTTTCAAGGGGGTGGTTCGTAAAAAGACCCCTTCTGGGTTT
AAACCTATAAAAAAATGTCTAATTTATAATTATGTCAAAGCATGGGAATG
AGCCCTTAAACCCGTCTGACTGAAGAGTATTAGGGCTCAAAATTTTTTCC
CCAGAGCTCATAAGAGGAGGGTATAATATCAAATTTATTTTATTTGGTTC
CCTCCACCTCGTTTATATGTAAAAAGCGTGGGTATAAATTTGTTGAAAAA
TATAA
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