FC871327

Overview
NameFC871327
Unique NameFC871327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3457 contig Csv1_Contig3457:293..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871327 vs. ExPASy Swiss-Prot
Match: RS103_ARATH (40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.961e-13
Identity = 31/35 (88.57%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 HYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 105
            HYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP
Sbjct:   63 HYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97
[Close]
BLAST of FC871327 vs. ExPASy Swiss-Prot
Match: RS101_ARATH (40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.961e-13
Identity = 31/35 (88.57%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 HYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 105
            HYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP
Sbjct:   63 HYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97
[Close]
BLAST of FC871327 vs. ExPASy Swiss-Prot
Match: RS102_ARATH (40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.893e-12
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 HYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 105
            HYYW+LTN+GI+FLRTYLNLPSEIVPATLKK  KP
Sbjct:   64 HYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKP 98
[Close]
BLAST of FC871327 vs. ExPASy Swiss-Prot
Match: RS10_ORYSJ (40S ribosomal protein S10 OS=Oryza sativa subsp. japonica GN=RPS10 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 7.697e-12
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 HYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 105
            +YYWYLTNDGIE LR YLNLPSEIVPATLKKSA+P
Sbjct:   63 YYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARP 97
The following BLAST results are available for this feature:
BLAST of FC871327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RS103_ARATH6.961e-1388.5740S ribosomal protein S10-3 OS=Arabidopsis thalian... [more]
RS101_ARATH6.961e-1388.5740S ribosomal protein S10-1 OS=Arabidopsis thalian... [more]
RS102_ARATH5.893e-1285.7140S ribosomal protein S10-2 OS=Arabidopsis thalian... [more]
RS10_ORYSJ7.697e-1288.5740S ribosomal protein S10 OS=Oryza sativa subsp. j... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAK2BG07FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2BG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871327 ID=FC871327; Name=FC871327; organism=Citrus sinensis; type=EST; length=541bp
CACTATTATTGGTATCTTACGAATGATGGGATTGAGTTTTTGAGGACTTA
CCTCAATCTTCCATCAGAAATTGTTCCTGCTACCTTGAAGAAATCCGCTA
AGCCAGCTGGTCGCCCGATGGGTGGACCTGGTGGTGATCGTCCAAGGGGC
CCACCTCGTTTTGATGGAGACCGACCGAGGTTTGGTGACCGTGAAGGGTA
CCGTGGTGGTCCTCGTGGTGGTGACTTTGGTGGTGAGAAAGGTGGAGCCC
CTGCTGATTTCCAGCCATCCTTCAGGGGTTCTGGTGGAAGACCTGGTTTT
GGTCGCGGAGGTGGAGGCTATGGTGCAGCTCCATCAGGTTCAGGATTTCC
TTGAAGTTAAGGCCGGTTTGCTTAGTTCATGTTTGCCCCAAATTAGTGTT
TCAAGTCTTTAGAACAAGTCTAATGCCTTTGTTGAATTTTCTATAGTATT
TCTGTAAGCTTTAAAGTACAATATTAAGTTCATTATGAGATCTTCAGTTT
TTCCTCAGCATGGCTGTTGGTTTAAAAAAAAAAAAAAAAAA
back to top