EY678998

Overview
NameEY678998
Unique NameEY678998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 8.669e-63
Identity = 120/167 (71.86%), Postives = 136/167 (81.44%), Query Frame = 1
Query:   37 LKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQPQL**VPENWKRGNAGEP 537
            LKKV+SR   SKV S S +I A VDE+KQT +DRWKGLA+D SDDQQDITRGKG VDSLFQAP G+GTH+A+MSSY+YIS GLR YN DN +DG YIAPAFMDKLVVHITKNFM+LPN+KVPLILGIWGGKGQGKSF+CEL F +    P +    E  + GNAGEP
Sbjct:   37 LKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRISPIMMSAGE-LESGNAGEP 202          
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 3.283e-62
Identity = 111/164 (67.68%), Postives = 130/164 (79.27%), Query Frame = 1
Query:   10 SPGSNPRVRL-KKVSSRIPP-SKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQP 486
            +P S P + L KKV +     +K+ S   ++ A   E+D+ KQT  DRWKGLAYD SDDQQDITRGKG VDSLFQAPMG GTH A++SSY+YISQGLR Y+ DNT+DGLYIAPAFMDKL+VH+ KNFM+LPNIKVPLILGIWGGKGQGKSF+CEL F + G  P
Sbjct:   11 APASTPTIFLGKKVKNYYHGGNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP 174          

HSP 2 Score: 41.5874 bits (96), Expect = 3.283e-62
Identity = 28/57 (49.12%), Postives = 33/57 (57.89%), Query Frame = 3
Query:  486 PIMMSAGKLEKGQCWRTPAKLIRQSTREAP*HLSGGEKRCCLMNQ*FLMQEPGLMGG 656
            PIMMSAG+LE G     PAKLIRQ  REA   ++ G+  C  +N   L    G MGG
Sbjct:  174 PIMMSAGELESGN--GEPAKLIRQRYREAADIINKGKMCCLFIND--LDAGAGRMGG 226          
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 2.135e-61
Identity = 120/168 (71.43%), Postives = 138/168 (82.14%), Query Frame = 1
Query:   37 LKKVSSRIPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQPQL**VPENWKRGNAGEP 537
            LKK +++ P  K  S +FKI A E+ E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSF+CEL F + G  P +    E  + GNAGEP
Sbjct:   38 LKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE-LESGNAGEP 202          
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 2.135e-61
Identity = 120/168 (71.43%), Postives = 138/168 (82.14%), Query Frame = 1
Query:   37 LKKVSSRIPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQPQL**VPENWKRGNAGEP 537
            LKK +++ P  K  S +FKI A E+ E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSF+CEL F + G  P +    E  + GNAGEP
Sbjct:   38 LKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE-LESGNAGEP 202          
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 4.027e-60
Identity = 116/178 (65.17%), Postives = 136/178 (76.40%), Query Frame = 1
Query:    4 GISPGSNPRVRLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQPQL**VPENWKRGNAGEP 537
            G+ P S       KVSSR   SK+ + +FKI AE DE KQT++D+W+GLA+D SDDQQDITRGKG  D LFQAPMGTGTH AV+SSY+YIS GLR Y+ DN +DG YIAPAFMDKL VHI KNF++LPNIKVPLILG+WGGKGQGKSF+CEL F + G  P +    E  + GNAGEP
Sbjct:   23 GLVPNSAFLGSRLKVSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGE-LESGNAGEP 199          
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 8.971e-60
Identity = 116/169 (68.64%), Postives = 134/169 (79.29%), Query Frame = 1
Query:   40 KKVSSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQPQL**VPENWKRGNAGEP 537
            K +SSR+P SK+ S SFKI A   E++E +QT+ DRW+GLAYD SDDQQDITRGKG VDSLFQAPM  GTHYAV+SS+ Y+S GLR YN DN  DG YIAPAF+DKLVVHI KNFM+LPNIKVPLILG+WGGKGQGKSF+CEL F + G  P +    E  + GNAGEP
Sbjct:   39 KVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGE-LESGNAGEP 206          
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 2.610e-59
Identity = 119/169 (70.41%), Postives = 135/169 (79.88%), Query Frame = 1
Query:   40 KKVSSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQPQL**VPENWKRGNAGEP 537
            K V+SR+P SKV + SFKI A   E++E++QT +DRWKGLAYD SDDQQDITRGKG VD LFQAPM  GTHYAVMSSY+Y+S GLR   LDN  DG YIAPAF+DKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSF+CEL F + G  P +    E  + GNAGEP
Sbjct:   39 KAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE-LESGNAGEP 204          
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 9.919e-59
Identity = 118/171 (69.01%), Postives = 132/171 (77.19%), Query Frame = 1
Query:   37 LKKVSSR-IPPSKVPSASFKITAE---VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQPQL**VPENWKRGNAGEP 537
            LKKV  + +   KV + S +I AE   VD  KQT  DRWKGL  D SDDQQDITRGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+ LPNIKVPLILGIWGGKGQGKSF+CEL FR+ G  P +    E  + GNAGEP
Sbjct:   37 LKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGE-LESGNAGEP 206          
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 1.295e-58
Identity = 115/164 (70.12%), Postives = 132/164 (80.49%), Query Frame = 1
Query:   46 VSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQPQL**VPENWKRGNAGEP 537
            VS     +K  + SFK+ A V E+KQT  DRW+GLAYD SDDQQDITRGKG VDS+FQAPMGTGTH+AV+SSY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILGIWGGKGQGKSF+CEL   + G  P +    E  + GNAGEP
Sbjct:   41 VSRFAQSNKKSNGSFKVLA-VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGE-LESGNAGEP 202          
BLAST of EY678998 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 8.397e-58
Identity = 113/151 (74.83%), Postives = 126/151 (83.44%), Query Frame = 1
Query:   88 FKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFRCELCFRQDGHQPQL**VPENWKRGNAGEP 537
            FK+ A E+DE KQT QDRWKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLRTY+ DNT+ G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSF+CEL F + G  P +    E  + GNAGEP
Sbjct:   44 FKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE-LESGNAGEP 193          
The following BLAST results are available for this feature:
BLAST of EY678998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA_MALDO8.669e-6371.86Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU3.283e-6267.68Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR2.135e-6171.43Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR2.135e-6171.43Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA4.027e-6065.17Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU8.971e-6068.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU2.610e-5970.41Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC9.919e-5969.01Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.295e-5870.12Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ8.397e-5874.83Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-053-G12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY678998 ID=EY678998; Name=EY678998; organism=Citrus sinensis; type=EST; length=916bp
CCGGGAATTTCCCCGGGGTCGAACCCACGCGTCCGCTTGAAGAAGGTAAG
CTCAAGGATCCCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATTACTG
CTGAAGTCGATGAGAACAAGCAGACCAAGCAGGACAGATGGAAGGGCCTT
GCCTACGACGAATCTGATGACCAACAAGACATCACCAGAGGAAAAGGTGC
TGTGGACTCTCTGTTCCAAGCCCCCATGGGAACCGGAACTCACTATGCTG
TCATGAGTTCTTATGACTACATCAGCCAAGGTCTCCGCACATACAACTTG
GACAACACGATCGACGGTCTCTACATTGCCCCTGCTTTCATGGACAAGCT
TGTTGTTCACATCACCAAGAACTTCATGTCCCTGCCCAACATCAAGGTTC
CTCTCATCTTGGGTATTTGGGGAGGCAAAGGACAAGGAAAATCATTCCGA
TGTGAGCTTTGTTTTCGCCAAGATGGGCATCAACCCCAATTATGATGAGT
GCCGGAAAATTGGAAAAGGGGCAATGCTGGAGAACCCCCGCTAAGTTGAT
CAGGCAAAGTACCCGGGAGGCACCTTGACATTTATCAGGAGGGGAAAAAA
GGTGCTGCCTCATGAATCAATGATTCTTGATGCAGGAGCCTGGCCTAATG
GGTGGGCCCCACCCCAAATACACCGATTAAAAACCCAATTGGTTAACGCC
ACACTCATAAAAATTGCTGAAAACCAAATTTTGTGTCCACATCCCCCTGG
AAGGTACCACCAGGAGGAAAAACCCCCGGGGCCCCAATCCTAGACCCACG
GAAAAGGATTTTTCCTCAACATTTGTATGCCCCCTCCTCTTCCCCGGAAG
GGGCGCATGAGGGAAAAATTCTCTCCCGGGGCCACCCAAACAGGGGGAGA
GTCCCGTGTTGCGGGG
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