FC871292

Overview
NameFC871292
Unique NameFC871292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6594 contig Csv1_Contig6594:2..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871292 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.396e-61
Identity = 115/137 (83.94%), Postives = 124/137 (90.51%), Query Frame = 1
Query:   82 LRGRKEMWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAELNPKLTIVRKHSSTAPNTASNGTGPSESTDDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            L GR+E+WE   LAEHIKFDHGY AKSPAI+NLLEIMGE T DQQRAFCQFVTGAPRLPPGGLA LNPKLTIVRKHSST+ + A+NG G SE+ DDDLPSVMTCANYLKLPPYSTKEIMYKKL+YAI+EGQGSFDLS
Sbjct: 1753 LCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTS-SAAANGAGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888          
BLAST of FC871292 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.961e-39
Identity = 83/137 (60.58%), Postives = 101/137 (73.72%), Query Frame = 1
Query:   82 LRGRKEMWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAELNPKLTIVRKHSSTAPNTASNGTGPSESTDDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            L G  +++    + +HIKFDHGYT+ SP +  LL+I+ EF  +QQRAF QFVTG+PRLP GGLA L+PKLTIVRKH              S+S+D DLPSVMTCANYLKLPPYS+KE M +KL+YAI+EGQGSF LS
Sbjct: 1379 LCGECDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSPRLPHGGLASLSPKLTIVRKHG-------------SDSSDTDLPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQGSFHLS 1502          
BLAST of FC871292 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.656e-28
Identity = 69/134 (51.49%), Postives = 83/134 (61.94%), Query Frame = 1
Query:   91 RKEMWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAELNPKLTIVRKHSSTAPNTASNGTGPSESTDDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            + + W+   L E  + DHGYT  S A+  L EI+  F  +QQR F QFVTG+PRLP GG   LNP LTIVRK   +           +E+ DD LPSVMTC NYLKLP YS+ EIM +KL+ A  EGQ SF LS
Sbjct: 1870 KADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFES-----------TENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAAREGQQSFHLS 1992          
BLAST of FC871292 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.458e-26
Identity = 65/132 (49.24%), Postives = 80/132 (60.61%), Query Frame = 1
Query:   97 EMWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAELNPKLTIVRKHSSTAPNTASNGTGPSESTDDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            E W  A L + I  DHGYT +SP I  LL +M +    +QR F QF+TG+ +LP GG A LNP LT+VR+ +            P    DD LPSVMTC NYLKLP YS+ E++  +L  AI EGQGSF LS
Sbjct: 1527 EDWSYATLMKSIVADHGYTMESPTIQRLLTLMSQMNFQEQRDFLQFITGSRKLPIGGFAGLNPPLTVVRRLNE-----------PPYVPDDYLPSVMTCVNYLKLPEYSSSEVLGSRLSKAILEGQGSFHLS 1647          
BLAST of FC871292 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.124e-25
Identity = 61/133 (45.86%), Postives = 82/133 (61.65%), Query Frame = 1
Query:   94 KEMWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAELNPKLTIVRKHSSTAPNTASNGTGPSESTDDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            +E W  A L  ++  +HGYT  S  I + + I+  F   ++R F QF+TG+P+LP GG   LNPK T+V KH       A +G     + D+ LPSVMTCANYLKLP Y++K+IM  +L  AI EG G+F LS
Sbjct: 1362 EEDWSMATLYTNLNAEHGYTMDSSIIHDFISIISAFGKHERRLFLQFLTGSPKLPIGGFKSLNPKFTVVLKH-------AEDGL----TADEYLPSVMTCANYLKLPKYTSKDIMRSRLCQAIEEGAGAFLLS 1483          
BLAST of FC871292 vs. ExPASy Swiss-Prot
Match: HECD1_HUMAN (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 7.251e-18
Identity = 47/122 (38.52%), Postives = 69/122 (56.56%), Query Frame = 1
Query:  103 WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAELNPKLTIVRKHSSTAPNTASNGTGPSESTDDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISE 468
            W    +  + +   GYT  SP  +  + ++   + D+++AF QF TG   LPPGGLA L+P+LT+VRK                ++TD   PSV TC +YLKLP YS++EIM ++L+ A  E
Sbjct: 2500 WAAEDIINYTEPKLGYTRDSPGFLRFVRVLCGMSSDERKAFLQFTTGCSTLPPGGLANLHPRLTVVRK---------------VDATDASYPSVNTCVHYLKLPEYSSEEIMRERLLAATME 2606          
BLAST of FC871292 vs. ExPASy Swiss-Prot
Match: UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 49/125 (39.20%), Postives = 64/125 (51.20%), Query Frame = 1
Query:  118 LAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAELNPKLTIVRKHSSTAPNTASNGTGPSESTDDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            L  +  +  GY A    I    E+M  F+ + Q+ F +FVTG  R P  G   L P   I R     A  +ASN       + D LP+  TC N LKLPPY +KE++  KL+YAIS  +  FDLS
Sbjct:  917 LRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPAFCIQR-----AAGSASN------ESVDRLPTSATCMNLLKLPPYQSKELLETKLMYAIS-AEAGFDLS 1029          
BLAST of FC871292 vs. ExPASy Swiss-Prot
Match: UBE3A_HUMAN (Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UBE3A PE=1 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 45/121 (37.19%), Postives = 62/121 (51.24%), Query Frame = 1
Query:  115 ALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAELNPKLTIVRKHSSTAPNTASNGTGPSESTDDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 477
            AL E  ++D GYT  S  I    EI+  FT +Q+R F QF TG  R P GGL +L  K+ I +    T                + LP+  TC N L LP YS+KE + ++L+ AI+  +G
Sbjct:  769 ALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAKNGPDT----------------ERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKG 871          
BLAST of FC871292 vs. ExPASy Swiss-Prot
Match: UBE3A_MOUSE (Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 44/121 (36.36%), Postives = 61/121 (50.41%), Query Frame = 1
Query:  115 ALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAELNPKLTIVRKHSSTAPNTASNGTGPSESTDDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 477
            AL E  ++D GYT +S  I    EI+  FT +Q+R F  F TG  R P GGL +L  K+ I +    T                + LP+  TC N L LP YS+KE +  +L+ AI+  +G
Sbjct:  779 ALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGLGKL--KMIIAKNGPDT----------------ERLPTSHTCFNVLLLPEYSSKEKLNVRLLKAITYAKG 881          
The following BLAST results are available for this feature:
BLAST of FC871292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
UPL3_ARATH1.396e-6183.94E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
UPL4_ARATH1.961e-3960.58E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis th... [more]
TRIPC_HUMAN2.656e-2851.49Probable E3 ubiquitin-protein ligase TRIP12 OS=Hom... [more]
YDE1_SCHPO1.458e-2649.24Probable ubiquitin fusion degradation protein C12B... [more]
UFD4_YEAST6.124e-2545.86Ubiquitin fusion degradation protein 4 OS=Saccharo... [more]
HECD1_HUMAN7.251e-1838.52E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens... [more]
UPL6_ARATH1.198e-1239.20E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis th... [more]
UBE3A_HUMAN1.324e-1137.19Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UB... [more]
UBE3A_MOUSE8.585e-1136.36Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ub... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2BC05FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2BC05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871292 ID=FC871292; Name=FC871292; organism=Citrus sinensis; type=EST; length=615bp
ATCATATGCCACTTTTTTGCAAGCGAGCCTATGAAATCGAATCATAACCA
AAATAAACTCCTCCGGAAAAGAACCATCAAGCTTAGAGGCCGAAAAGAGA
TGTGGGAGCCTGCAGCGCTTGCAGAGCATATAAAATTCGATCATGGATAC
ACTGCCAAGAGTCCTGCAATTGTTAACTTACTAGAGATCATGGGAGAATT
CACACCAGATCAGCAGCGTGCCTTCTGTCAGTTTGTTACTGGTGCACCTC
GACTTCCGCCGGGTGGGTTGGCGGAGCTGAATCCAAAGCTTACCATTGTC
AGAAAGCATTCTTCAACTGCACCTAATACAGCATCAAATGGAACCGGGCC
TTCGGAATCAACGGATGATGACTTGCCAAGTGTCATGACTTGTGCCAATT
ACCTGAAGCTTCCTCCTTACTCTACCAAGGAAATTATGTACAAGAAACTG
GTTTATGCAATAAGCGAAGGGCAGGGATCTTTTGATCTGTCATGAGTTCT
CAAAACTAAACCGATGGACCTTTGTATATAAATATATGTGTCATCAAGTC
AATTCTCTTACCTGGGGATTATTCCTCTTTGAAAGTAGCATCATATTTCA
GTCAAATAATGGCTG
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