FC871290

Overview
NameFC871290
Unique NameFC871290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6898 contig Csv1_Contig6898:2..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871290 vs. ExPASy Swiss-Prot
Match: Y5620_ARATH (Putative RNA methyltransferase At5g10620 OS=Arabidopsis thaliana GN=At5g10620 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.847e-36
Identity = 78/145 (53.79%), Postives = 100/145 (68.97%), Query Frame = 3
Query:   39 KRALAGPVLEDENIGKLKYYCKVEDLQLRASPKNTGDVKAQIKDEDMAVMNIISSDEW--------------------------GASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 395
            KR+    +L DE   KLK YC  ED  +R++P+N  DV+AQ++DE++A+M +I SD+W                          GASRISFCIGG YGHG ++R+RAN++I+LSSMVLNHQIAL+VL+EQLYRSWTILKGQNYHH
Sbjct:   49 KRSEGVRLLVDEYKIKLKPYCSFEDSLVRSNPRNAQDVRAQVEDEEVAMMKLIGSDDWVVVLDERGRDIDSEQMAELLGDAGNSGASRISFCIGGAYGHGTQVRKRANVTIRLSSMVLNHQIALVVLMEQLYRSWTILKGQNYHH 193          
BLAST of FC871290 vs. ExPASy Swiss-Prot
Match: RLMH_CYTH3 (Ribosomal RNA large subunit methyltransferase H OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rlmH PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 46/131 (35.11%), Postives = 66/131 (50.38%), Query Frame = 3
Query:   84 KLKYYCKVEDLQLRASPKNT---GDVKAQ---------IKDEDMAVM-----NIISSDEWG----------ASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 395
            +L +Y   E L++   PKNT    DV  +         ++D D  ++     N  +S E+G          A  + F IGGPYG    + +RAN  I LS M  +HQ+  L  +EQLYR+ TI+KG+ YHH
Sbjct:   26 RLPHYLPFEYLEI-PEPKNTKLSSDVLKKEEEKLIFDRLQDSDQLILLDEKGNEFTSTEFGQYIQKKMNSVAGNLIFLIGGPYGFSDAVYKRANGKIALSKMTFSHQMVRLFALEQLYRACTIIKGEKYHH 155          
The following BLAST results are available for this feature:
BLAST of FC871290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y5620_ARATH1.847e-3653.79Putative RNA methyltransferase At5g10620 OS=Arabid... [more]
RLMH_CYTH37.813e-1135.11Ribosomal RNA large subunit methyltransferase H OS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2BC01FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2BC01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871290 ID=FC871290; Name=FC871290; organism=Citrus sinensis; type=EST; length=675bp
AGATATTTTTGCTTTGTATGGACAAATCTAACTCCCCAAAGAGGGCTCTG
GCAGGACCAGTACTTGAGGATGAGAACATTGGAAAGCTTAAATATTACTG
CAAAGTTGAGGATCTTCAACTCCGAGCCAGTCCCAAAAATACTGGTGATG
TGAAGGCTCAGATTAAGGATGAAGACATGGCGGTGATGAACATTATCAGC
TCTGATGAGTGGGGAGCTTCAAGGATATCATTTTGCATCGGTGGACCTTA
TGGCCATGGACCAAAAATGAGAGAACGCGCTAACATATCAATCAAGCTGT
CTTCAATGGTCTTAAATCATCAAATTGCATTACTTGTACTTGTGGAACAA
CTTTATAGGTCGTGGACAATTCTGAAGGGTCAAAATTACCATCATTAGGA
TGCCAATTTGGCTGCCTGCTTGAATAGTCCAATGGATGAGCGTTTCTTGT
TCGTGATGGTTAGTTGAAGAAGCACTCTGAATTTTGATTTGATGAAGTAA
ACTACCAAATGGACTTGCTCCCAAACAAGCATTTGTCAGCAGACTCAATT
TGTTTCAATGGAGAGATTGAAATGATACGGTATGTTCAGTGACCAGTAAT
TATTGCTTGTTGCAGTACTGCTTCAGTGTACTGTATAATTCTTGATCCAA
TGAACTGAAAGTCAAAGACCATTTT
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