DY257296

Overview
NameDY257296
Unique NameDY257296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1358
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6573 contig Csv1_Contig6573:1..1358. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY257296 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 4.528e-43
Identity = 89/94 (94.68%), Postives = 89/94 (94.68%), Query Frame = 3 
Query:    3 SLFIAKLLLAPVADGISLSIGRRGYAAAAPLGTISRTGIMEKNDLTPAVREDSGASSAWAPDPITGYYRPENRAVEIDPTELREMLLNQKVRAH 284
            SLF AKLLLAPVADGISLSI RRGYAAAAPLGTISRTGIMEKNDL PAVREDSGASSAWAPDPITGYYRPENRAVEIDP ELREMLLN KVRAH
Sbjct:    4 SLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97
[Close]
BLAST of DY257296 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.123e-17
Identity = 50/96 (52.08%), Postives = 62/96 (64.58%), Query Frame = 3 
Query:   18 KLLLAPVADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPTELREMLLNQKVRA 281
            KLL A + DG+ +SI RRGY+ A P     +  R G M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID  ELREMLLN +VR+
Sbjct:    9 KLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104
[Close]
BLAST of DY257296 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 8.049e-16
Identity = 47/96 (48.96%), Postives = 60/96 (62.50%), Query Frame = 3 
Query:   18 KLLLAPVADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPTELREMLLNQKVRA 281
            K L A V D + +SI RRGY+ A P     +  R G M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID  +LREM+LN +VR+
Sbjct:    9 KFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104
The following BLAST results are available for this feature:
BLAST of DY257296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI4.528e-4394.68Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI1.123e-1752.08Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI8.049e-1648.96Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAK1DF01FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257296 ID=DY257296; Name=DY257296; organism=Citrus sinensis; type=EST; length=1358bp
GCTCTCTCTTCATTGCTAAGCTTCTTCTTGCTCCTGTTGCTGATGGCATC
TCGCTCTCCATTGGCAGGAGAGGATATGCTGCAGCAGCACCCTTGGGAAC
CATATCTCGGACTGGTATCATGGAGAAAAATGATTTGACGCCTGCGGTGA
GAGAGGATTCTGGGGCCTCTTCTGCCTGGGCCCCAGATCCCATCACTGGG
TACTACAGGCCGGAGAATCGGGCGGTCGAGATTGATCCAACAGAGCTTCG
AGAGATGCTGTTGAACCAAAAAGTCAGGGCACACTAGGGAGTGGTCGCGC
ATAGCAGCAGATCCTTTGCTGTTAGGGGTGCTTTACCTTTTATGTGATGT
GTGGTCGGTACCAATTTCGTCTCGATCCACCACCCCAGGCCGTGCGGTTG
ATATCAAACCGAAAGTAATACATAACAAAACAACAAATCACATGACATGA
TTTTCTCTCAACTTGACATGTACCACAAAAGAATAGAATGCCCTGGATTG
CAAAAAACCAACAAAAAAAAAAACAAACCCAACATTTCCTGCACTGAAAG
TATAAAAACAAAGAAATGAATGAGCATATTCCTAGCGTCGAAACGGCATA
ACTAACTTGACCAGAAAAACCTCTATAATTAGCTACCATCCCTAAATCAA
ACACCATCCCCTCCGCCCCTACTTAACTCCAACCCCAACACTAGGCCTGC
ACTCCACCCAAAAGATCCCATGACTAAGAACGTCACTCAACCGAAGTTAA
ACAGTCAAACACCAACCCACCGCAAACACAACACATACACCCAACCCCCC
CTCGAGACATACCCAACCCATATCACGCATAAAAATAATCCCACACACAA
ACCAGACACAAGTAACCCATCATCCGACAATCACCTCACCACACCACACA
CCCACCAATCCATCCCCACTAAACCGCCATCCTCACTCCCTTCAACCCCA
CTTCAACACATCCCCCACCAGACAATCTACTAAATACTTCCTCGTTCCAT
AATAACACAGACTCTCAATAACAAGTGAGGATAAATGGACACATAACATA
CATACAAACATCTCACACATTTCCCGACACAACATACTAACAAAAAACTG
AACTTCACACAACATACCACTACATCAACCAGTATCTAAATATAATAAAT
TACACACAAACTTATACAATTCACACAACTCCAAACAAACACTAGTGAAT
AAACTTCGTCTCCGCAACCATACGTATAAACGCACCATTTACGACATCTA
CTAATCATACAACACATCCACTTACACTAATCAATGGTGACATCCACAGC
CCAAATAGCGACGAGGCCCAGTTACCCCATACATTACAACACAGACCTCC
TCCACGCC
back to top