DY257293

Overview
NameDY257293
Unique NameDY257293
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1235
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257293_ssr1058 microsatellite DY257293_ssr1058:1058..1067. BLAST: Citrus ESTs to Prunus persica proteins V1
DY257293_ssr765 microsatellite DY257293_ssr765:765..776. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY257293 vs. ExPASy Swiss-Prot
Match: PPA7_ARATH (Purple acid phosphatase 7 OS=Arabidopsis thaliana GN=PAP7 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 6.639e-22
Identity = 53/115 (46.09%), Postives = 75/115 (65.22%), Query Frame = 2
Query:  161 TELPWIEHPAKP--DGSLNFQVVGYWGRTGADHLTKVAHHMGIAGEKLKIDFIISTGDNFYDDGLTGVNNAAFFEPFDNINTAPNLAKQW*NDLAIYPKRKKHQGKIKPSIRKKN 499
            ++L  ++HP K   DGSL+F V+G WGR G  + + VAH MG+ GEKL IDF+IS GDNFYDDGL GVN+ +F   F +I T P+L KQW + L  +  R   + ++   + +K+
Sbjct:   24 SKLERLKHPVKKKSDGSLSFLVIGDWGRKGGFNQSLVAHQMGVVGEKLDIDFVISVGDNFYDDGLKGVNDPSFEASFSHIYTHPSLQKQWYSVLGNHDYRGNVEAQLSKVLTQKD 138          
BLAST of DY257293 vs. ExPASy Swiss-Prot
Match: PPA8_ARATH (Purple acid phosphatase 8 OS=Arabidopsis thaliana GN=PAP8 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.295e-21
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 2
Query:  149 CPSSTELPWIEHPAKPDGSLNFQVVGYWGRTGADHLTKVAHHMGIAGEKLKIDFIISTGDNFYDDGLTGVNNAAFFEPFDNINTAPNLAKQW*NDLAIYPKRKKHQGKIKPSIR 490
            C S+ ELP    P +PDGSL+F VVG WGR G+ + ++VA  MG  G+ L IDF+ISTGDNFYDDG+    ++ F + F NI TA +L K W N L  +  R     ++ P +R
Sbjct:   26 CNSTAELPRFVQPPEPDGSLSFLVVGDWGRRGSYNQSQVALQMGKIGKDLNIDFLISTGDNFYDDGIISPYDSQFQDSFTNIYTATSLQKPWYNVLGNHDYRGNVYAQLSPILR 139          
BLAST of DY257293 vs. ExPASy Swiss-Prot
Match: PPA3_ARATH (Purple acid phosphatase 3 OS=Arabidopsis thaliana GN=PAP3 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.620e-21
Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 2
Query:  155 SSTELPWIEHPAKPDGSLNFQVVGYWGRTGADHLTKVAHHMGIAGEKLKIDFIISTGDNFYDDGLTGVNNAAFFEPFDNINTAPNLAKQW*NDLAIYPKRKKHQGKIKPSIR 490
            S+ EL  +  P+K DG+++F V+G WGR G+ + ++VA  MG  GEKL IDF+ISTGDNFYD+GLT +++  F + F NI TAP+L K W + L  +  R   + ++ P +R
Sbjct:   57 STAELRRLLQPSKTDGTVSFLVIGDWGRRGSYNQSQVALQMGEIGEKLDIDFVISTGDNFYDNGLTSLHDPLFQDSFTNIYTAPSLQKPWYSVLGNHDYRGDVRAQLSPMLR 168          
BLAST of DY257293 vs. ExPASy Swiss-Prot
Match: PPA17_ARATH (Purple acid phosphatase 17 OS=Arabidopsis thaliana GN=PAP17 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.116e-20
Identity = 50/118 (42.37%), Postives = 74/118 (62.71%), Query Frame = 2
Query:  140 TIFCPSSTELPWIEHPAKPDGSLNFQVVGYWGRTGADHLTKVAHHMGIAGEKLKIDFIISTGDNFYDDGLTGVNNAAFFEPFDNINTAPNLAKQW*NDLAIYPKRKKHQGKIKPSIRK 493
            T    S+ EL     PAK DGS++F V+G WGR G+ + + VA+ MG  GEK+ +DF++STGDNFYD+GL   ++  F + F NI TAP+L KQW + L  +  R   + ++   +R+
Sbjct:   24 TFVVVSNGELQRFIEPAKSDGSVSFIVIGDWGRRGSFNQSLVAYQMGKIGEKIDLDFVVSTGDNFYDNGLFSEHDPNFEQSFSNIYTAPSLQKQWYSVLGNHDYRGDAEAQLSSVLRE 141          
BLAST of DY257293 vs. ExPASy Swiss-Prot
Match: PPA4_ARATH (Purple acid phosphatase 4 OS=Arabidopsis thaliana GN=PAP4 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.453e-18
Identity = 44/109 (40.37%), Postives = 69/109 (63.30%), Query Frame = 2
Query:  164 ELPWIEHPAKPDGSLNFQVVGYWGRTGADHLTKVAHHMGIAGEKLKIDFIISTGDNFYDDGLTGVNNAAFFEPFDNINTAPNLAKQW*NDLAIYPKRKKHQGKIKPSIR 490
            EL  ++H   PDGS++F V+G WGR G  + ++VA  MG  GE++ I+F++STGDN YD+G+  +++ AF   F NI T+P+L K W   L  +  R   + ++ P +R
Sbjct:   32 ELATVQHAPNPDGSISFLVIGDWGRHGLYNQSQVALQMGRIGEEMDINFVVSTGDNIYDNGMKSIDDPAFQLSFSNIYTSPSLQKPWYLVLGNHDYRGDVEAQLSPILR 140          
The following BLAST results are available for this feature:
BLAST of DY257293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PPA7_ARATH6.639e-2246.09Purple acid phosphatase 7 OS=Arabidopsis thaliana ... [more]
PPA8_ARATH3.295e-2146.49Purple acid phosphatase 8 OS=Arabidopsis thaliana ... [more]
PPA3_ARATH5.620e-2145.54Purple acid phosphatase 3 OS=Arabidopsis thaliana ... [more]
PPA17_ARATH8.116e-2042.37Purple acid phosphatase 17 OS=Arabidopsis thaliana... [more]
PPA4_ARATH4.453e-1840.37Purple acid phosphatase 4 OS=Arabidopsis thaliana ... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAK1DE08FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257293 ID=DY257293; Name=DY257293; organism=Citrus sinensis; type=EST; length=1235bp
GAAAGCCACCGATATGCCTGTTACGATATCGGTGGTTTGCTGCTATGTGA
TGTGATGAATTATTAAATTGAGATCAACTGCTTAACCAAAAAAACAAAAA
AATTAATAATACAAACATTGACTCTTCAAAGCAACTTGAACAATTTTTTG
CCCCTCATCAACTGAACTTCCATGGATCGAACACCCGGCCAAACCCGACG
GGTCTCTGAACTTTCAGGTCGTCGGATATTGGGGAAGAACAGGGGCCGAC
CACCTAACTAAAGTTGCCCACCATATGGGAATAGCGGGAGAGAAGCTCAA
GATTGATTTCATAATATCAACCGGAGATAATTTTTATGATGATGGACTGA
CCGGTGTGAACAATGCCGCATTCTTTGAACCATTTGACAACATCAACACT
GCTCCAAACTTGGCCAAACAATGGTAAAATGATCTGGCCATTTATCCAAA
AAGAAAAAAACACCAAGGCAAAATTAAACCCAGCATTCGCAAAAAAAACA
AGAACAATGCCCACGCTCTCCTTCCCTAACCCACACAAACCAGCACCACC
GAACCAAACCATCATACACCCCACCCCATTTACCATCAAAATTCATCCAC
ACACCAACAATAACAAACGCACAAGGAAAACCACCACCTAACACACACAA
GTCCGCAACCATAGCGACCACAAAACAAAGTCACCATACAGAATTATAAT
ACACCAACCAAAACAAGTCCGATTACTAAATAACGCAAAACAATTTCACA
TACAAACCTAACCTAAACAAACAAACATAATACACCCAAAAAATACCCGA
ACACAAACATACAAAAAAAAAAACCAACACACACCAGAATCCCCACCGCC
CTCCAACTAATCCAATAAAACACAATTCATAATAACCATCAACACCAACC
AGAAAAACAAGCTAGTTCAGTGATACCACTCGCCAAAACCGCAACGCGTG
AATACTGACTGTAGACGGTCGAACCACCACAGCAAACGAACTACAAAACC
CCACAGCTAAATACAACAAAACTACAAGCCACAAACCATGGAATACAACT
AATACAAACACACACACCAACACACACCGCAAAACGAAAACATATACACC
CCAATCGCATTATTACAACTCGCCCCACCTCCCCTAAAACCACCTACCTA
AACATCTCACCACTCATTACTCCCCCAACCACCCAAACCCACCTGCACTA
TGACCCTCTCACCCCATAAAAAAATCGCCCTCGAC
back to top