DY257283
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 263.462 bits (672), Expect = 1.559e-69 Identity = 134/197 (68.02%), Postives = 157/197 (79.70%), Query Frame = 3 Query: 171 VAEETAXXXXXXVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 V EET+ + E ARR+Y+GNIPRN++NDEL IV+EHGA+E AEV+YDKY+GRSRRF FVTMKTVEDANAVIEKLN TEIGGR+IKVNITEKPL +D++ QAEDS FV+S YKVY+GNLAKTVT+E+LK FSEKG+VL AKV R PGTSKS+GFGFV+F LNNS+LEGQ+IRVNKA Sbjct: 64 VTEETSSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.686e-31 Identity = 86/253 (33.99%), Postives = 133/253 (52.57%), Query Frame = 3 Query: 51 THFTFQSRQPILQIRFPKLSY---SLHNLKTASIEDST----------TRLFAVAEETAXXXXXXVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLA---QVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 THF F+ L+ FP S S+ AS+ D L A EE V++ S R+Y+GN+P ++ + +L++I E G V E++YD+ T RSR FAFVTM +VE+A I +G+++GGR +KVN E P +V + +++ FVDS +K+YV NL+ +TS+ L+ F+++ +SAKV + +S GFGF+TF +N LEG+ +R+N A Sbjct: 41 THFNFKINSTKLKAHFPISSLYRSSIFLSTCASVSDGVEVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 6.204e-26 Identity = 74/196 (37.76%), Postives = 102/196 (52.04%), Query Frame = 3 Query: 234 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSN--------------------FVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 ++++GN+P ++D+ L + + G VE EVIYDK TGRSR F FVTM T E+ A ++ NG EI GR I+VN P + + S N VDS+ +VYVGNL+ V LK+ FSE+G V+ AKV + +S GFGFVT+ LN L+G+ IRV+ A Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAA 283 HSP 2 Score: 70.4774 bits (171), Expect = 1.937e-11 Identity = 32/80 (40.00%), Postives = 52/80 (65.00%), Query Frame = 3 Query: 228 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEK 467 + RVY+GN+ +D+ L ++ E G V A+V+YD+ +GRSR F FVT + ++ N I+ LNG ++ GR I+V+ E+ Sbjct: 206 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEE 285
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 8.102e-26 Identity = 68/177 (38.42%), Postives = 101/177 (57.06%), Query Frame = 3 Query: 234 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLL-QAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 ++++GN+P + D+ L ++ + G VE EVIYDK TGRSR F FVTM + E+ A ++ NG E+ GR ++VN P + + S + DS+ +VYVGNLA V + L+ FSE+G+V+ AKV + +S GFGFVT+ L+ L G+ IRV+ A Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264 HSP 2 Score: 73.9442 bits (180), Expect = 1.752e-12 Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 3 Query: 228 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITE 464 + RVY+GN+ +D D L + E G V A+V+YD+ +GRSR F FVT + E+ N IE L+G ++ GR I+V+ E Sbjct: 187 SNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 1.382e-25 Identity = 75/197 (38.07%), Postives = 111/197 (56.35%), Query Frame = 3 Query: 171 VAEETAXXXXXXVDTPSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 V++E P E A+ +++GN+P ++D+++L I G VE AEVIY++ T RSR F FVTM TVE+A +E LNG ++ GR++ VN A S +A +F + + +VYVGNL V + L++ FSE G+V+SA+V T +S GFGFVT L+ L+G+ +RVN A Sbjct: 36 VSDEGGVEGGQGFSEPPEEAK-LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN-----KAAPRGSPERAPRGDF-EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA 225 HSP 2 Score: 76.6406 bits (187), Expect = 2.703e-13 Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 3 Query: 234 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEK 467 RVY+GN+P ++D L ++ EHG V A V+ D+ TGRSR F FVTM + + N I L+G + GR ++VN+ E+ Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEE 227
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 3.079e-25 Identity = 73/196 (37.24%), Postives = 102/196 (52.04%), Query Frame = 3 Query: 234 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSN--------------------FVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 ++++GN+P ++D+ L + + G VE EVIYDK +GRSR F FVTM T E+ A ++ NG EI GR I+VN P + + S N VDS+ +VYVGNL+ V LK+ FSE+G V+ AKV + +S GFGFVT+ LN L+G+ IRV+ A Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAA 284 HSP 2 Score: 70.8626 bits (172), Expect = 1.483e-11 Identity = 32/80 (40.00%), Postives = 52/80 (65.00%), Query Frame = 3 Query: 228 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEK 467 + RVY+GN+ +D+ L ++ E G V A+V+YD+ +GRSR F FVT + ++ N I+ LNG ++ GR I+V+ E+ Sbjct: 207 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEE 286
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 3.079e-25 Identity = 68/190 (35.79%), Postives = 106/190 (55.79%), Query Frame = 3 Query: 234 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNF--------------VDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 ++++GN+P N+D+ +L ++ + G VE EVIYDK TGRSR F FVTM +V + A ++ NG E+ GR ++VN P + D + S+F S +VYVGNL+ V L+ FSE+G+V+ A+V + +S GFGFVT+ L+ + L+G++IRV++A Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRED-GFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 8.958e-25 Identity = 70/185 (37.84%), Postives = 104/185 (56.22%), Query Frame = 3 Query: 234 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNF---------VDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 ++++GN+ + D+ L ++ + G VE EVIYDK TGRSR F FVTM + E+ A ++ NG E+ GR ++VN P + + S E+S+F DS+ +VYVGNLA V + L+ FSE+G+V+ AKV + +S GFGFVT+ L+ L G+ IRV+ A Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSF--RENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 270 HSP 2 Score: 73.9442 bits (180), Expect = 1.752e-12 Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 3 Query: 228 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITE 464 + RVY+GN+ +D D L + E G V A+V+YD+ +GRSR F FVT + E+ N IE L+G ++ GR I+V+ E Sbjct: 193 SNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 3.404e-24 Identity = 67/182 (36.81%), Postives = 105/182 (57.69%), Query Frame = 3 Query: 216 PSEFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 PSE A+ +++GN+P +ID++ L ++ Q+ G VE AEVIY++ T RSR F FVTM TVE+A+ +E + ++ GR + VN ++ + + TY++YVGN+ + L++ FSE G+V+SA+V + +S GFGFVT L+ L+G+ IRVN A Sbjct: 93 PSEDAK-LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERA------PRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAA 267 HSP 2 Score: 74.7146 bits (182), Expect = 1.027e-12 Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 3 Query: 234 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEK 467 R+Y+GNIP +ID+ L ++ EHG V A V++D+ +GRSR F FVTM + + + I L+G + GR I+VN E+ Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEE 269
BLAST of DY257283 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.294e-23 Identity = 61/176 (34.66%), Postives = 100/176 (56.82%), Query Frame = 3 Query: 234 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLAQVDLSLLQAEDSNFVDSTYKVYVGNLAKTVTSEMLKKNFSEKGQVLSAKVSRVPGTSKSSGFGFVTFXXXXXXXXXXXXLNNSLLEGQRIRVNKA 761 ++++GN+P ++D++ L ++ ++ G VE AEVIY++ T +SR F FVTM TVE+A +E N ++ GR + VN + + + + +Y++YVGN+ + L++ FSE G+V+SA+V T +S GFGFVT L+ L+G+ IRVN A Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPE------RPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306 HSP 2 Score: 78.1814 bits (191), Expect = 9.292e-14 Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = 3 Query: 222 EFARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITE 464 E + R+Y+GNIP ID+ L ++ EHG V A V+YD+ TGRSR F FVTM + + + I L+G + GR I+VN+ E Sbjct: 227 EQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307 The following BLAST results are available for this feature:
BLAST of DY257283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >DY257283 ID=DY257283; Name=DY257283; organism=Citrus sinensis; type=EST; length=1072bpback to top |