FC871267

Overview
NameFC871267
Unique NameFC871267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13487 contig Csv1_Contig13487:1..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: GAE1_ARATH (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.239e-53
Identity = 103/158 (65.19%), Postives = 119/158 (75.32%), Query Frame = 1
Query:  190 PYRKENRKGLFYKRNTATFHD*DNVDHTYNHLYCLAITGLRLFTGYGPWGRHEMAYFSNTRNIRQGKPITVYRGKNHVNLARDFTYIEDIMKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLRVKAKKNVIEMPGNGDV 663
            P+ + +R         AT    + + HTYNH+Y LAITGLR FT YGPWGR +MAYFS TRNI QGKPIT+YRGKN V+LARDFTYI+DI+KGCLGSLD            RG APYRIFNLGNTSPVTVP LV+ILE+HL+VKAK+N +EMPGNGDV
Sbjct:  225 PFSESDRTDQPASLYAATKKAGEEITHTYNHIYGLAITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITIYRGKNRVDLARDFTYIDDIVKGCLGSLDSSGKSTGSGGKKRGAAPYRIFNLGNTSPVTVPILVDILEKHLKVKAKRNFVEMPGNGDV 382          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: GAE4_ARATH (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.327e-42
Identity = 86/163 (52.76%), Postives = 111/163 (68.10%), Query Frame = 1
Query:  178 LNT-FPYRKENRKGLFYKRNTATFHD*DNVDHTYNHLYCLAITGLRLFTGYGPWGRHEMAYFSNTRNIRQGKPITVYRGKNHVNLARDFTYIEDIMKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLRVKAKKNVIEMPGNGDV 663
            LNT  P+ ++++         AT    + + HTYNH+Y L++TGLR FT YGPWGR +MAYF  T++I +GK I+++   NH  +ARDFTYI+DI+KGCL +LD            RGPA  R+FNLGNTSPV V  LV ILER L+VKAKKN+I+MP NGDV
Sbjct:  229 LNTKVPFSEKDKTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKSISIFESANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDLVRILERQLKVKAKKNLIKMPRNGDV 391          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: GAE3_ARATH (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.088e-41
Identity = 86/163 (52.76%), Postives = 112/163 (68.71%), Query Frame = 1
Query:  178 LNT-FPYRKENRKGLFYKRNTATFHD*DNVDHTYNHLYCLAITGLRLFTGYGPWGRHEMAYFSNTRNIRQGKPITVYRGKNHVNLARDFTYIEDIMKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLRVKAKKNVIEMPGNGDV 663
            LNT  P+ +++R         AT    + + HTYNH+Y L++TGLR FT YGPWGR +MAYF  TR+I +GK I+++ G NH  +ARDFTYI+DI+KGCLG+LD            RG A  R+FNLGNTSPV V  LV ILER L+VKAK+N++++P NGDV
Sbjct:  223 LNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEGVNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVTILERLLKVKAKRNIMKLPRNGDV 385          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: GAE2_ARATH (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.088e-41
Identity = 86/163 (52.76%), Postives = 113/163 (69.33%), Query Frame = 1
Query:  178 LNT-FPYRKENRKGLFYKRNTATFHD*DNVDHTYNHLYCLAITGLRLFTGYGPWGRHEMAYFSNTRNIRQGKPITVYRGKNHVNLARDFTYIEDIMKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLRVKAKKNVIEMPGNGDV 663
            LNT  P+ +++R         AT    + + HTYNH+Y L++TGLR FT YGPWGR +MAYF  TR+I +GK I+++ G NH  +ARDFTYI+DI+KGCLG+LD            RG A  R+FNLGNTSPV V  LV+ILER L+VKAK+N++++P NGDV
Sbjct:  224 LNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEGANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVSILERLLKVKAKRNMMKLPRNGDV 386          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: GAE5_ARATH (UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.018e-39
Identity = 80/158 (50.63%), Postives = 109/158 (68.99%), Query Frame = 1
Query:  190 PYRKENRKGLFYKRNTATFHD*DNVDHTYNHLYCLAITGLRLFTGYGPWGRHEMAYFSNTRNIRQGKPITVYRGKNHVNLARDFTYIEDIMKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLRVKAKKNVIEMPGNGDV 663
            P+ +++R         AT    + + HTYNH+Y L++TGLR FT YGPWGR +MAYF  T++I +GK ITV+   +  ++ARDFTYI+DI+KGCLG+LD            +GPA +RI+NLGNTSPV V KLV ILE+ L++KAKK ++ +P NGDV
Sbjct:  233 PFSEKDRTDQPASLYAATKKAGEGIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKTITVFESPDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSPVPVTKLVTILEKLLKMKAKKKIMPLPRNGDV 390          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: GAE6_ARATH (UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.470e-38
Identity = 80/158 (50.63%), Postives = 107/158 (67.72%), Query Frame = 1
Query:  190 PYRKENRKGLFYKRNTATFHD*DNVDHTYNHLYCLAITGLRLFTGYGPWGRHEMAYFSNTRNIRQGKPITVYRGKNHVNLARDFTYIEDIMKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLRVKAKKNVIEMPGNGDV 663
            P+ +E+R         AT    + + HTYNH+Y L++TGLR FT YGPWGR +MAYF  T++I  GK I +YR +++  +ARDFTYI+DI+KGC+G+LD            RG A  R++NLGNTSPV V +LV+ILE  L  KAKK++I+MP NGDV
Sbjct:  249 PFSEEHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKRGQAQLRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDV 406          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: YCL2_ECO11 (Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia coli O111:H- PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.477e-22
Identity = 58/135 (42.96%), Postives = 80/135 (59.26%), Query Frame = 1
Query:  268 HTYNHLYCLAITGLRLFTGYGPWGRHEMAYFSNTRNIRQGKPITVYRGKNHVNLARDFTYIEDIMKGCLGSLDXXXXXXXXXXXXRGP-----APYRIFNLGNTSPVTVPKLVNILERHLRVKAKKNVIEM-PGN 654
            HTY+HLY L  TGLR FT YGPWGR +MA F  T+ + +GK I VY   N+  + RDFTYI+DI +  +   D             G      APYR++N+GN+SPV +   +  LE  L ++AKKN++ + PG+
Sbjct:  163 HTYSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVY---NYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGD 294          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.058e-20
Identity = 58/158 (36.71%), Postives = 87/158 (55.06%), Query Frame = 1
Query:  190 PYRKENRKGLFYKRNTATFHD*DNVDHTYNHLYCLAITGLRLFTGYGPWGRHEMAYFSNTRNIRQGKPITVYRGKNHVNLARDFTYIEDIMKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLRVKAKKNVIEMPGNGDV 663
            P+ +++R         +T    + + H Y+HLY + + GLR FT YG +GR +MAYF   +NI  GK I VY   N+ N+ RDFTYI D++ G L ++             +    Y IFNLGN+ PV +   + ++E++L  KAKK  + M  +GDV
Sbjct:  143 PFSEDDRVDKPISLYASTKRSNELMAHVYHHLYGIKMIGLRFFTVYGEYGRPDMAYFKFAKNILLGKEIEVY---NYGNMERDFTYISDVVDGILRAI-------------KKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPMQ-DGDV 283          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: CAPI_STAAU (Protein capI OS=Staphylococcus aureus GN=capI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.058e-20
Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 1
Query:  268 HTYNHLYCLAITGLRLFTGYGPWGRHEMAYFSNTRNIRQGKPITVYRGKNHVNLARDFTYIEDIMKGCLGSLDXXXXXXXXXXXXRGP------APYRIFNLGNTSPVTVPKLVNILERHLRVKAKKNVIEM-PGN 654
            HTY+HLY L  TGLR FT YGPWGR +MA F  T+ I   + I VY   NH N+ RDFTY++DI++  +  L               P      APY+++N+GN SPV + + V  +E  L  +A+KN +++ PG+
Sbjct:  163 HTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVY---NHGNMMRDFTYVDDIVE-AISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGD 294          
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_CITSI (DNA-directed RNA polymerase subunit alpha OS=Citrus sinensis GN=rpoA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.876e-20
Identity = 52/77 (67.53%), Postives = 55/77 (71.43%), Query Frame = 3
Query:    3 FTFPYRXXXXXXXXXXXXXXSIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KK 233
            FTF  R              SIFIDQ EMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHF I++ KQ  +IL KK
Sbjct:  252 FTFHDRLAKLTKKKKEIALKSIFIDQSEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFRIEDVKQIMSILEKK 328          
The following BLAST results are available for this feature:
BLAST of FC871267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
GAE1_ARATH1.239e-5365.19UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thali... [more]
GAE4_ARATH8.327e-4252.76UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thali... [more]
GAE3_ARATH1.088e-4152.76UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thali... [more]
GAE2_ARATH1.088e-4152.76UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thali... [more]
GAE5_ARATH1.018e-3950.63UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thali... [more]
GAE6_ARATH1.470e-3850.63UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thali... [more]
YCL2_ECO111.477e-2242.96Uncharacterized 37.6 kDa protein in cld 5'region O... [more]
Y1055_METJA1.058e-2036.71Uncharacterized protein MJ1055 OS=Methanocaldococc... [more]
CAPI_STAAU1.058e-2041.18Protein capI OS=Staphylococcus aureus GN=capI PE=3... [more]
RPOA_CITSI8.876e-2067.53DNA-directed RNA polymerase subunit alpha OS=Citru... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DH06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871267 ID=FC871267; Name=FC871267; organism=Citrus sinensis; type=EST; length=663bp
TTTTTACTTTTCCTTATAGATTGGCTAAACTAACGAAAAAGAAAAAAGAA
ATCGCATTGAAATCGATTTTTATTGACCAATTAGAAATGTCTCCCAGGAT
CTATAATTGTCTCAAAAAGTCCAATATACATACATTATTCGACCTTTTGA
ATACCCGTCAAGAAGACCTTATGAAAATTGAACACTTTCCCATACAGGAA
GGAAAACAGAAAAGGACTATTCTATAAAAGAAACACAGCAACATTTCACG
ACTGAGATAACGTAGATCACACCTACAATCACCTTTACTGCCTCGCAATT
ACCGGGCTGAGGTTATTCACTGGGTACGGACCCTGGGGCCGACACGAGAT
GGCTTACTTCTCGAACACAAGAAATATTCGCCAAGGCAAACCAATCACGG
TTTATCGGGGGAAGAATCACGTCAACTTGGCACGAGATTTTACTTACATT
GAGGATATCATGAAGGGATGTTTAGGTTCGCTGGATACCTCGGGTAAGAG
TACCGGGTCGGGCGGAAAGAAGCGGGGCCCAGCACCGTACCGGATCTTTA
ATTTGGGGAACACGTCACCGGTCACGGTACCTAAGCTGGTGAATATATTG
GAGAGACACCTGAGGGTAAAAGCCAAGAAGAATGTAATCGAAATGCCTGG
AAACGGCGACGTC
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