FC871267
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: GAE1_ARATH (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 1.239e-53 Identity = 103/158 (65.19%), Postives = 119/158 (75.32%), Query Frame = 1 Query: 190 PYRKENRKGLFYKRNTATFHD*DNVDHTYNHLYCLAITGLRLFTGYGPWGRHEMAYFSNTRNIRQGKPITVYRGKNHVNLARDFTYIEDIMKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLRVKAKKNVIEMPGNGDV 663 P+ + +R AT + + HTYNH+Y LAITGLR FT YGPWGR +MAYFS TRNI QGKPIT+YRGKN V+LARDFTYI+DI+KGCLGSLD RG APYRIFNLGNTSPVTVP LV+ILE+HL+VKAK+N +EMPGNGDV Sbjct: 225 PFSESDRTDQPASLYAATKKAGEEITHTYNHIYGLAITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITIYRGKNRVDLARDFTYIDDIVKGCLGSLDSSGKSTGSGGKKRGAAPYRIFNLGNTSPVTVPILVDILEKHLKVKAKRNFVEMPGNGDV 382
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: GAE4_ARATH (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 8.327e-42 Identity = 86/163 (52.76%), Postives = 111/163 (68.10%), Query Frame = 1 Query: 178 LNT-FPYRKENRKGLFYKRNTATFHD*DNVDHTYNHLYCLAITGLRLFTGYGPWGRHEMAYFSNTRNIRQGKPITVYRGKNHVNLARDFTYIEDIMKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLRVKAKKNVIEMPGNGDV 663 LNT P+ ++++ AT + + HTYNH+Y L++TGLR FT YGPWGR +MAYF T++I +GK I+++ NH +ARDFTYI+DI+KGCL +LD RGPA R+FNLGNTSPV V LV ILER L+VKAKKN+I+MP NGDV Sbjct: 229 LNTKVPFSEKDKTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKSISIFESANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDLVRILERQLKVKAKKNLIKMPRNGDV 391
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: GAE3_ARATH (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.088e-41 Identity = 86/163 (52.76%), Postives = 112/163 (68.71%), Query Frame = 1 Query: 178 LNT-FPYRKENRKGLFYKRNTATFHD*DNVDHTYNHLYCLAITGLRLFTGYGPWGRHEMAYFSNTRNIRQGKPITVYRGKNHVNLARDFTYIEDIMKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLRVKAKKNVIEMPGNGDV 663 LNT P+ +++R AT + + HTYNH+Y L++TGLR FT YGPWGR +MAYF TR+I +GK I+++ G NH +ARDFTYI+DI+KGCLG+LD RG A R+FNLGNTSPV V LV ILER L+VKAK+N++++P NGDV Sbjct: 223 LNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEGVNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVTILERLLKVKAKRNIMKLPRNGDV 385
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: GAE2_ARATH (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.088e-41 Identity = 86/163 (52.76%), Postives = 113/163 (69.33%), Query Frame = 1 Query: 178 LNT-FPYRKENRKGLFYKRNTATFHD*DNVDHTYNHLYCLAITGLRLFTGYGPWGRHEMAYFSNTRNIRQGKPITVYRGKNHVNLARDFTYIEDIMKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLRVKAKKNVIEMPGNGDV 663 LNT P+ +++R AT + + HTYNH+Y L++TGLR FT YGPWGR +MAYF TR+I +GK I+++ G NH +ARDFTYI+DI+KGCLG+LD RG A R+FNLGNTSPV V LV+ILER L+VKAK+N++++P NGDV Sbjct: 224 LNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEGANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVSILERLLKVKAKRNMMKLPRNGDV 386
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: GAE5_ARATH (UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.018e-39 Identity = 80/158 (50.63%), Postives = 109/158 (68.99%), Query Frame = 1 Query: 190 PYRKENRKGLFYKRNTATFHD*DNVDHTYNHLYCLAITGLRLFTGYGPWGRHEMAYFSNTRNIRQGKPITVYRGKNHVNLARDFTYIEDIMKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLRVKAKKNVIEMPGNGDV 663 P+ +++R AT + + HTYNH+Y L++TGLR FT YGPWGR +MAYF T++I +GK ITV+ + ++ARDFTYI+DI+KGCLG+LD +GPA +RI+NLGNTSPV V KLV ILE+ L++KAKK ++ +P NGDV Sbjct: 233 PFSEKDRTDQPASLYAATKKAGEGIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKTITVFESPDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSPVPVTKLVTILEKLLKMKAKKKIMPLPRNGDV 390
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: GAE6_ARATH (UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.470e-38 Identity = 80/158 (50.63%), Postives = 107/158 (67.72%), Query Frame = 1 Query: 190 PYRKENRKGLFYKRNTATFHD*DNVDHTYNHLYCLAITGLRLFTGYGPWGRHEMAYFSNTRNIRQGKPITVYRGKNHVNLARDFTYIEDIMKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLRVKAKKNVIEMPGNGDV 663 P+ +E+R AT + + HTYNH+Y L++TGLR FT YGPWGR +MAYF T++I GK I +YR +++ +ARDFTYI+DI+KGC+G+LD RG A R++NLGNTSPV V +LV+ILE L KAKK++I+MP NGDV Sbjct: 249 PFSEEHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKRGQAQLRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDV 406
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: YCL2_ECO11 (Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia coli O111:H- PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.477e-22 Identity = 58/135 (42.96%), Postives = 80/135 (59.26%), Query Frame = 1 Query: 268 HTYNHLYCLAITGLRLFTGYGPWGRHEMAYFSNTRNIRQGKPITVYRGKNHVNLARDFTYIEDIMKGCLGSLDXXXXXXXXXXXXRGP-----APYRIFNLGNTSPVTVPKLVNILERHLRVKAKKNVIEM-PGN 654 HTY+HLY L TGLR FT YGPWGR +MA F T+ + +GK I VY N+ + RDFTYI+DI + + D G APYR++N+GN+SPV + + LE L ++AKKN++ + PG+ Sbjct: 163 HTYSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVY---NYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGD 294
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.058e-20 Identity = 58/158 (36.71%), Postives = 87/158 (55.06%), Query Frame = 1 Query: 190 PYRKENRKGLFYKRNTATFHD*DNVDHTYNHLYCLAITGLRLFTGYGPWGRHEMAYFSNTRNIRQGKPITVYRGKNHVNLARDFTYIEDIMKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLRVKAKKNVIEMPGNGDV 663 P+ +++R +T + + H Y+HLY + + GLR FT YG +GR +MAYF +NI GK I VY N+ N+ RDFTYI D++ G L ++ + Y IFNLGN+ PV + + ++E++L KAKK + M +GDV Sbjct: 143 PFSEDDRVDKPISLYASTKRSNELMAHVYHHLYGIKMIGLRFFTVYGEYGRPDMAYFKFAKNILLGKEIEVY---NYGNMERDFTYISDVVDGILRAI-------------KKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPMQ-DGDV 283
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: CAPI_STAAU (Protein capI OS=Staphylococcus aureus GN=capI PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.058e-20 Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 1 Query: 268 HTYNHLYCLAITGLRLFTGYGPWGRHEMAYFSNTRNIRQGKPITVYRGKNHVNLARDFTYIEDIMKGCLGSLDXXXXXXXXXXXXRGP------APYRIFNLGNTSPVTVPKLVNILERHLRVKAKKNVIEM-PGN 654 HTY+HLY L TGLR FT YGPWGR +MA F T+ I + I VY NH N+ RDFTY++DI++ + L P APY+++N+GN SPV + + V +E L +A+KN +++ PG+ Sbjct: 163 HTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVY---NHGNMMRDFTYVDDIVE-AISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQPGD 294
BLAST of FC871267 vs. ExPASy Swiss-Prot
Match: RPOA_CITSI (DNA-directed RNA polymerase subunit alpha OS=Citrus sinensis GN=rpoA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.876e-20 Identity = 52/77 (67.53%), Postives = 55/77 (71.43%), Query Frame = 3 Query: 3 FTFPYRXXXXXXXXXXXXXXSIFIDQLEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFPIQEGKQKRTIL*KK 233 FTF R SIFIDQ EMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHF I++ KQ +IL KK Sbjct: 252 FTFHDRLAKLTKKKKEIALKSIFIDQSEMSPRIYNCLKKSNIHTLFDLLNTRQEDLMKIEHFRIEDVKQIMSILEKK 328 The following BLAST results are available for this feature:
BLAST of FC871267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871267 ID=FC871267; Name=FC871267; organism=Citrus sinensis; type=EST; length=663bpback to top |