DY257262

Overview
NameDY257262
Unique NameDY257262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1342
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2198 contig Csv1_Contig2198:658..1999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY257262 vs. ExPASy Swiss-Prot
Match: TBCD_HUMAN (Tubulin-specific chaperone D OS=Homo sapiens GN=TBCD PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.998e-11
Identity = 39/123 (31.71%), Postives = 63/123 (51.22%), Query Frame = 3 
Query:  153 NGCIFQTNVTFVSHPIALFLVG----EVKATKDFSKLYAGIAILGYIASVSDPISTRAFSYLLNFLGHRFPKIRKASTEQVYLVLLQNGNILEEDKTEKALEIIGETCWEGDMNVAKHQRLEL 509
            +GC F    T   HP A+ L+     E+K +KD  KL +GIA+   +      +  +A   L   L HRFP IRK +  QVY  LL   +++  D  ++ + ++ +T W+ ++ V + QR  L
Sbjct: 1053 HGC-FDIFTTEEDHPFAVKLLALCKKEIKNSKDIQKLLSGIAVFCGMVQFPGDVRRQALLQLCLLLCHRFPLIRKTTASQVYETLLTYSDVVGADVLDEVVTVLSDTAWDAELAVVREQRNRL 1174
The following BLAST results are available for this feature:
BLAST of DY257262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TBCD_HUMAN9.998e-1131.71Tubulin-specific chaperone D OS=Homo sapiens GN=TB... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK1DA06FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257262 ID=DY257262; Name=DY257262; organism=Citrus sinensis; type=EST; length=1342bp
GGTTTCCAGAATAATATTGGTTGGTTATTGTATTTGTTCTTATATCTTTG
ACATGTAAAGGCAACTGAAATTATTGGGTATTCATGGTTAGCATATAGCT
AGTGTTCTTATGAATTGCAACCAGTCATGTCTAGTATTGCTACAGGAAGG
AGAACGGATGTATATTTCAAACTAATGTGACATTTGTTTCACATCCAATT
GCTCTTTTTTTGGTTGGGGAGGTTAAAGCCACCAAGGACTTCTCCAAACT
CTATGCAGGTATCGCAATACTTGGATATATTGCTTCAGTTTCAGATCCCA
TCAGCACCCGAGCGTTCTCTTATCTTCTCAATTTCCTTGGCCATAGATTC
CCCAAGATTCGAAAAGCTTCAACAGAACAGGTTTACCTTGTCCTCCTTCA
AAATGGAAATATTTTGGAAGAAGACAAGACAGAGAAAGCACTAGAAATTA
TTGGTGAAACTTGCTGGGAAGGCGACATGAATGTAGCAAAGCACCAAAGG
TTAGAATTGTATAATTTTGGCAGAGTGGTAGTCAGGATCCTCCCAACACC
CAACACAATTACTCACTGCAACTACAATCTTACTCCACTACTGCATTCAA
AGAATCACCTACACTAATCAACCCCTAAAGTAGATCATAGAGAACTCCCC
TTACTCATTATCCATATATCACTAAACATAATCTCCACCCTCCCCTAACC
AATCCCACCAACCGCAAAACACCACCATGACACACAATAAACATCCACAT
ATCCGACCAGCATATACTTCCTACTCGGCCCCACCTTTGCAACATAACTC
GAAAAACTCACTCCACCACGCCACTCAACAACCATGCTATGAGTACCTCC
CCACAGTCTATATCACGTCCTTCATGTATTAGGAACAAGAAAAAATAAGA
TTAACCATACCAAGGCGCTCAACTCCACAGTGATCTTCTAAATCACACTC
ATCAACAGCCATCCATCAAACATTCGACTATACTAGAACACTATACAAAA
CAAAAGACTGAAATACAACCTAGTGCAAACATACTACACAACAACCAAGT
TCGCACAACGAATAACTACACGGGTACACACGACTGCCCACACANTCCCG
GCGTCAATATGTGCAAAGTACCGACTTGTAGNTCTGTGCACACCCGTCCT
CTTATTAAGCGTGTTGACCGCTACATCACTTGATCTCCATCTTCGTCGAC
ACTAATTACACAAAATAACCACTTTCTAACACAATAATATCAAGCTTCAA
ACATGTCACTAAAGCGTCTATTCACCATCTATCACCATGTCCTAAAAATA
CAACACCTGCCCACCAACCTCATCCACCGTAACTAGATCCCA
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