FC871260

Overview
NameFC871260
Unique NameFC871260
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC871260_ssr18 microsatellite FC871260_ssr18:18..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1895 contig Csv1_Contig1895:26..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC871260 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.534e-24
Identity = 84/240 (35.00%), Postives = 99/240 (41.25%), Query Frame = 1 
Query:  145 EANLHCLEPWTKRKRSKRPHNPPTEEEYLALCLVMLARGTTSTAVLTNCNTTTAASQRQKXXXXXXXXXXXXXDQKLLFKCSVCDKAFSSYQALGGHKASHR--KGSGGGDEHXXXXXXXXXXXXXXXGV-----------PNATGRTHECSICHKSFPTGQALGGHKRCHYDGG-----------EKXXXXXXXXXXXXXXXXXRDFDPHLPVLPEL------SPAFFVFGDDEVESPL 774
            E + H L+ W KRKRS+R  +   EEE LALCL+ML+RG           +  A    +                   FKCSVC K+FSSYQALGGHK SHR  + S   D                                AT R H CSIC K FPTGQALGGHKR HYDGG                              R FD ++P +PE               D+EV+SPL
Sbjct:   34 EESGHVLQGWAKRKRSRRQRS---EEENLALCLLMLSRGGKQRVQAPQPESFAAPVPAE-------------------FKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKRKHYDGGVGAAASSTELLAAAAAESEVGSTGNGSSAARAFDLNIPAVPEFVWRPCAKGKMMWEDDEEVQSPL 251
The following BLAST results are available for this feature:
BLAST of FC871260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT3.534e-2435.00Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK3DG07FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871260 ID=FC871260; Name=FC871260; organism=Citrus sinensis; type=EST; length=774bp
CTGAATCTGAAATTAAGCTCTCTCTCTCTCTCTCTCTCTCGCTCTTTCAC
ACTCACTCTTGGTTTTAGATTCAAAAGAGTAACGGAGATGGCACTGGAAG
CTCTCAACTCTCCAACTACTTCGACGCCGCCGTTTCACTTCGAAGAAGCT
AATCTTCACTGCCTTGAGCCATGGACCAAACGCAAGCGCTCAAAGCGTCC
ACACAATCCTCCAACTGAAGAAGAGTATCTCGCGCTCTGCCTCGTCATGC
TTGCACGTGGCACAACCTCCACCGCCGTCTTAACTAACTGCAACACGACC
ACCGCCGCCTCACAGCGACAGAAGTCTCCTGCTCTATCTACTGCTGCAAC
GACGTCGTCCTCTGACCAGAAGCTTCTCTTCAAGTGCAGCGTGTGCGACA
AGGCGTTTTCTTCTTACCAAGCCTTGGGTGGTCACAAGGCCAGCCACCGT
AAGGGATCTGGGGGCGGCGATGAACACTCCGCATCCACTACCACCAACAC
CAACGCAACCGCCACGACCACCGGCGTACCGAACGCCACTGGTAGGACCC
ACGAGTGTTCCATCTGTCACAAGTCCTTCCCCACTGGCCAAGCCTTGGGC
GGACACAAACGTTGTCACTACGATGGCGGCGAGAAGAGCGGAGTGACGTC
ATCCGGATCCAGTAGCACTCACAGCCAAGTCAGCCACCGTGACTTTGACC
CTCACCTCCCTGTCTTACCGGAGCTCTCCCCTGCTTTCTTCGTCTTCGGT
GATGACGAGGTGGAGAGTCCACTG
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