DY257506

Overview
NameDY257506
Unique NameDY257506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length480
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257506_ssr253 microsatellite DY257506_ssr253:253..270. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6915 contig Csv1_Contig6915:75..554. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257506 vs. ExPASy Swiss-Prot
Match: PFD3_ARATH (Probable prefoldin subunit 3 OS=Arabidopsis thaliana GN=At5g49510 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 5.178e-37
Identity = 72/84 (85.71%), Postives = 81/84 (96.43%), Query Frame = 1
Query:    1 SEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQ 252
            SEGI+SRA IEDTDSVCLWLGANVMLEYSC+EA+ LL+ NLENAKASLEVL+ADLQFLRDQVT+TQVT+ARVYNWDVHQRR++Q
Sbjct:  101 SEGIYSRACIEDTDSVCLWLGANVMLEYSCEEASALLKNNLENAKASLEVLVADLQFLRDQVTVTQVTIARVYNWDVHQRRVKQ 184          
BLAST of DY257506 vs. ExPASy Swiss-Prot
Match: PFD3_PONAB (Prefoldin subunit 3 OS=Pongo abelii GN=VBP1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.159e-20
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 SEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 240
            ++ ++ +A +  TD VCLWLGANVMLEY  DEA  LL+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:  108 ADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 187          
BLAST of DY257506 vs. ExPASy Swiss-Prot
Match: PFD3_MOUSE (Prefoldin subunit 3 OS=Mus musculus GN=Vbp1 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.159e-20
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 SEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 240
            ++ ++ +A +  TD VCLWLGANVMLEY  DEA  LL+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:  107 ADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 186          
BLAST of DY257506 vs. ExPASy Swiss-Prot
Match: PFD3_HUMAN (Prefoldin subunit 3 OS=Homo sapiens GN=VBP1 PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 2.582e-20
Identity = 45/80 (56.25%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 SEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 240
            ++ ++ +A +  TD +CLWLGANVMLEY  DEA  LL+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:  108 ADNLYCKASVPPTDKMCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 187          
BLAST of DY257506 vs. ExPASy Swiss-Prot
Match: PFD3_BOVIN (Prefoldin subunit 3 OS=Bos taurus GN=VBP1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.582e-20
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 SEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 240
            ++ ++ +A +  TD VCLWLGANVMLEY  DEA  LL+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:  108 ADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQALLEKNLLTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 187          
BLAST of DY257506 vs. ExPASy Swiss-Prot
Match: PFD3_DICDI (Probable prefoldin subunit 3 OS=Dictyostelium discoideum GN=pfdn3 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.672e-17
Identity = 41/81 (50.62%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 SEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 243
            SEG++S A++ +  S+ LWLGANVMLEYS +EA  +L+KN +     L   I DL F++DQ+T T V V+RVYN+D+ Q+R
Sbjct:  102 SEGVYSSAQVNEPKSIYLWLGANVMLEYSFEEAREVLRKNKDTVDRQLSESIQDLGFVKDQITTTDVNVSRVYNYDIIQKR 182          
BLAST of DY257506 vs. ExPASy Swiss-Prot
Match: PFD3_DROME (Probable prefoldin subunit 3 OS=Drosophila melanogaster GN=CG6719 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.915e-15
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 SEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 243
            S+ +F +  +  T +V LWLGA+VMLEY  DEA  LL +N+ +A  +L+ +  D  FLRDQ+T T+V +ARVYNW V +R+
Sbjct:   94 SDQVFIKTLVPPTKTVYLWLGASVMLEYPLDEAEALLNQNITSAVGNLKSVEHDQDFLRDQITTTEVNMARVYNWGVKKRQ 174          
BLAST of DY257506 vs. ExPASy Swiss-Prot
Match: PFD3_SCHPO (Probable prefoldin subunit 3 OS=Schizosaccharomyces pombe GN=SPAC3H8.07c PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.051e-13
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   16 SRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 243
            ++A +E  D+V LWLGANVMLEY+ +EA  LL + L +A+ +L+    DL+FLR QVT  +V  ARVYN+ V  R+
Sbjct:   90 AKAEVEAKDNVYLWLGANVMLEYTVEEAEALLTQKLNSAEETLKACKEDLEFLRAQVTTMEVNTARVYNYTVLLRK 165          
BLAST of DY257506 vs. ExPASy Swiss-Prot
Match: PFD3_YEAST (Prefoldin subunit 3 OS=Saccharomyces cerevisiae GN=PAC10 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.057e-13
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    1 SEGIFSRARIEDTDS-----VCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 243
            ++ ++++A+++  +      V LWLGA+VMLEY  DEA  LL+K L +++ SL V   D++FLR+ +T  +V  AR+YNWDV +R+
Sbjct:  100 NDTLYTKAQVDIPEDRADLKVGLWLGADVMLEYPIDEAIELLKKKLADSEQSLTVSTEDVEFLRENITTMEVNCARLYNWDVQRRQ 185          
BLAST of DY257506 vs. ExPASy Swiss-Prot
Match: PFD3_CAEEL (Probable prefoldin subunit 3 OS=Caenorhabditis elegans GN=pfd-3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.677e-11
Identity = 28/81 (34.57%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    1 SEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 243
            S+ ++++A ++  + V +WLGANVM+EY  + A  LL KN  + +  ++ L  +L +++DQ+T T+V ++ + N+ V++RR
Sbjct:   95 SDDVYTKATVQKPEKVSIWLGANVMVEYDLENARKLLDKNRGSVQKVVDELTNELSYIKDQITTTEVNMSHIVNFGVNKRR 175          
The following BLAST results are available for this feature:
BLAST of DY257506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PFD3_ARATH5.178e-3785.71Probable prefoldin subunit 3 OS=Arabidopsis thalia... [more]
PFD3_PONAB1.159e-2057.50Prefoldin subunit 3 OS=Pongo abelii GN=VBP1 PE=2 S... [more]
PFD3_MOUSE1.159e-2057.50Prefoldin subunit 3 OS=Mus musculus GN=Vbp1 PE=2 S... [more]
PFD3_HUMAN2.582e-2056.25Prefoldin subunit 3 OS=Homo sapiens GN=VBP1 PE=1 S... [more]
PFD3_BOVIN2.582e-2057.50Prefoldin subunit 3 OS=Bos taurus GN=VBP1 PE=2 SV=... [more]
PFD3_DICDI2.672e-1750.62Probable prefoldin subunit 3 OS=Dictyostelium disc... [more]
PFD3_DROME1.915e-1548.15Probable prefoldin subunit 3 OS=Drosophila melanog... [more]
PFD3_SCHPO1.051e-1350.00Probable prefoldin subunit 3 OS=Schizosaccharomyce... [more]
PFD3_YEAST3.057e-1341.86Prefoldin subunit 3 OS=Saccharomyces cerevisiae GN... [more]
PFD3_CAEEL1.677e-1134.57Probable prefoldin subunit 3 OS=Caenorhabditis ele... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2DF05FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257506 ID=DY257506; Name=DY257506; organism=Citrus sinensis; type=EST; length=480bp
TCTGAAGGCATATTTTCGCGGGCTCGCATTGAGGATACAGATTCAGTGTG
TTTATGGCTGGGAGCAAATGTCATGTTAGAGTATTCATGTGACGAGGCTA
CTGTTCTTTTGCAGAAGAATTTAGAGAATGCTAAAGCAAGTTTAGAAGTA
CTTATTGCCGATTTGCAATTCTTGAGGGATCAAGTTACTATAACTCAGGT
TACCGTTGCTCGTGTTTATAATTGGGATGTTCATCAGCGGAGAATTCGAC
AGGCTGCTGCTGCTGCTGCTAATGAGTCATGAAATGAACCTTATCTTATA
ATTTCACTTGGATGCAGAGGTGGGGCAGAATATGCACCTAACCTCTCTTG
TTTCTTCGTTTACGCCAATGGATTGTCCTTGTATTATCCCGTGACTTAAA
TTAGATATTATTGTTTCTCTCCACATCTACACTTCCAATCCCCCATCATG
GTTCAATGATGGACCAGTTTTGATTCATGA
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