DY257160

Overview
NameDY257160
Unique NameDY257160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1310
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6542 contig Csv1_Contig6542:1..1310. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257160 vs. ExPASy Swiss-Prot
Match: SYFB_ARATH (Probable phenylalanyl-tRNA synthetase beta chain OS=Arabidopsis thaliana GN=At1g72550 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 7.154e-22
Identity = 76/203 (37.44%), Postives = 103/203 (50.74%), Query Frame = 2
Query:  251 EEPAKRYDMLCLAGIARPLRVLKKRMAIPKLALTDVLTDSMLQLFAKPETSSTREYVF*AVLIDISFEEGRYNSFIDLQDKLLHNICPETNPCGN*DS*LELVTRPFHV*GFAAITNKFLCHRSRHGTSQPMSLWSFTNQI*N*KNICTYLKNSPLYPVLKEPNRTVLSLS---NN**WGPFLPSP*KLKTGFID*SAPDLTK 850
            E PA R D+LCL G+A+ LRV  ++  IP   L D+  D +LQ+  KPETS  R +V  AVL  ++F+E RYNSFIDLQDKL  NIC   +        L+ +  PF           F+  +    + +   L  F       K     ++NSP++PVL +  RTVLSL    N    G       + K  FI+ +A DLTK
Sbjct:   66 EIPANRPDLLCLEGLAQSLRVFIEKQEIPTYTLADISKDKILQMNVKPETSKIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRSLVAIGTHDLDTLQGPFTYEALPPTDINFVPLKQTK-SFRADELIEFYKSDMKLKKFLHIIENSPVFPVLYDSKRTVLSLPPIIN----GAHSAITLQTKNVFIECTATDLTK 263          

HSP 2 Score: 74.3294 bits (181), Expect = 1.766e-12
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  607 FVPPKQTRDFTANELMEFYKPDLKLKKYLHLFEEFSSVPCF---KRTE*DCSVLIQQLIMGAISALTLKTKNGVH*LIRPRFDQTPRLVINPLLTIFPEYCHRKYQM 918
            FVP KQT+ F A+EL+EFYK D+KLKK+LH+ E     P     KRT     + +  +I GA SA+TL+TKN           +  ++V+N ++T F E+C RK+++
Sbjct:  184 FVPLKQTKSFRADELIEFYKSDMKLKKFLHIIENSPVFPVLYDSKRTV----LSLPPIINGAHSAITLQTKNVFIECTATDLTKA-KIVLNTMVTTFSEFCARKFEI 285          
BLAST of DY257160 vs. ExPASy Swiss-Prot
Match: SYFB_CAEEL (Phenylalanyl-tRNA synthetase beta chain OS=Caenorhabditis elegans GN=frs-2 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.110e-17
Identity = 58/170 (34.12%), Postives = 86/170 (50.59%), Query Frame = 2
Query:  257 PAKRYDMLCLAGIARPLRVLKKRMAIPKLALTDVLTDSMLQLFAKPETSSTREYVF*AVLIDISFEEGRYNSFIDLQDKLLHNICPETNPCGN*DS*LELVTRPFHV*GFAAITNKF--LCHRSRHGTSQPMSLWSFTNQI*N*KNICTYLKNSPLYPVLKEPNRTVLSL 760
            PA RYD+L + G+AR +R+ K+ +  P     DV    + ++  K ET+  R +V  AVL DISF+   Y SFIDLQDKL  NIC +          L+ +  PF     A    KF  L     +   + M+L+S  + +   K     ++N P+YPV+ + N  V S+
Sbjct:   68 PANRYDLLSVEGLARAIRIFKQEIPSPAYKYADVPKTGLQKIIVKKETAQVRPFVVGAVLRDISFDADSYASFIDLQDKLHQNICRKRTLVAIGTHDLDTIQGPFEYRAEAPKDIKFKPLNQTKEYTAEELMTLYSTDSHL---KAYLPIIQNHPVYPVIYDKNGVVCSM 234          
BLAST of DY257160 vs. ExPASy Swiss-Prot
Match: SYFB_DROME (Probable phenylalanyl-tRNA synthetase beta chain OS=Drosophila melanogaster GN=CG5706 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.182e-16
Identity = 69/203 (33.99%), Postives = 97/203 (47.78%), Query Frame = 2
Query:  257 PAKRYDMLCLAGIARPLRVLKKRMAIPKLALTDVLTDSMLQLFAKPETSSTREYVF*AVLIDISFEEGRYNSFIDLQDKLLHNICPETNPCGN*DS*LELVTRPFHV*GFAAITNKF--LCHRSRHGTSQPMSLWSFTNQI*N*KNICTYLKNSPLYPVLKEPNRTVLSLS---NN**WGPFLPSP*KLKTGFID*SAPDLTK 850
            PA RYD+LCL G+   L V + ++  PK    ++    +L++   P T+  R Y   AVL +++F +  YNSFIDLQDKL  NIC +          L+ +  PF     A    KF  L        S+ M  +S   Q+   K     ++ SP+YPV+ + NR VLSL    N    G       K K  FI+ +A D TK
Sbjct:   69 PANRYDLLCLEGLVTGLLVFQGKLKPPKFQFVELAKRQVLKI--DPSTAQIRPYAVAAVLRNVTFTQASYNSFIDLQDKLHQNICRKRTLVAIGTHDLDTLQGPFSYEALAPDQIKFKPLNQTKEMTGSELMDFYSTHAQL---KQYLPIIRESPVYPVIYDANRVVLSLPPIIN----GDHSKITLKTKNVFIECTATDRTK 262          
BLAST of DY257160 vs. ExPASy Swiss-Prot
Match: SYFB_PONAB (Phenylalanyl-tRNA synthetase beta chain OS=Pongo abelii GN=FARSB PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.802e-15
Identity = 59/177 (33.33%), Postives = 90/177 (50.85%), Query Frame = 2
Query:  239 LISYEEPAKRYDMLCLAGIARPLRVLKKRMAIPKLALTDVLTDSMLQ-LFAKPETSSTREYVF*AVLIDISFEEGRYNSFIDLQDKLLHNICPETNPCGN*DS*LELVTRPFHV*GFAAITNKF--LCHRSRHGTSQPMSLWSFTNQI*N*KNICTYLKNSPLYPVLKEPNRTVLSL 760
            L   + PA RYD+LCL G+ R L+V K+R+  P      V+ D  +Q L    ET+  R +   AVL +I F + RY+SFI+LQ+KL  NIC +          L+ ++ PF          KF  L     +   + M+++   N +   K+    ++N PLYPV+ + N  VLS+
Sbjct:   62 LYKIDVPANRYDLLCLEGLVRGLQVFKERIKAP--VYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHL---KHYLHIIENKPLYPVIYDSNGVVLSM 233          
BLAST of DY257160 vs. ExPASy Swiss-Prot
Match: SYFB_HUMAN (Phenylalanyl-tRNA synthetase beta chain OS=Homo sapiens GN=FARSB PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 3.802e-15
Identity = 59/177 (33.33%), Postives = 90/177 (50.85%), Query Frame = 2
Query:  239 LISYEEPAKRYDMLCLAGIARPLRVLKKRMAIPKLALTDVLTDSMLQ-LFAKPETSSTREYVF*AVLIDISFEEGRYNSFIDLQDKLLHNICPETNPCGN*DS*LELVTRPFHV*GFAAITNKF--LCHRSRHGTSQPMSLWSFTNQI*N*KNICTYLKNSPLYPVLKEPNRTVLSL 760
            L   + PA RYD+LCL G+ R L+V K+R+  P      V+ D  +Q L    ET+  R +   AVL +I F + RY+SFI+LQ+KL  NIC +          L+ ++ PF          KF  L     +   + M+++   N +   K+    ++N PLYPV+ + N  VLS+
Sbjct:   62 LYKIDVPANRYDLLCLEGLVRGLQVFKERIKAP--VYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHL---KHYLHIIENKPLYPVIYDSNGVVLSM 233          
BLAST of DY257160 vs. ExPASy Swiss-Prot
Match: SYFB_DICDI (Phenylalanyl-tRNA synthetase beta chain OS=Dictyostelium discoideum GN=pheSB PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.219e-14
Identity = 58/191 (30.37%), Postives = 91/191 (47.64%), Query Frame = 2
Query:  194 EFGVNDFC*AIRRQ*LISYEEPAKRYDMLCLAGIARPLRVLKKRMAIPKLALTDVLTDSMLQLFAKPETSSTREYVF*AVLIDISFEEGRYNSFIDLQDKLLHNICPETNPCGN*DS*LELVTRPFHV*GFAAITNKF--LCHRSRHGTSQPMSLWSFTNQI*N*KNICTYLKNSPLYPVLKEPNRTVLSL 760
            E GV D    +    +   +  A RYD+LCL GIAR L V   + +IPK  +     +S  +L+   E  S R  +   +L DI+F +  Y+SFIDLQ+KL  NIC + +        L+ ++ PF+    A    KF  L     +   +    +  ++   + K     +K+SP+YPV+ +    V SL
Sbjct:   51 ETGVEDL--TVSDDVIYKIDVSANRYDLLCLEGIARALNVYNHKASIPKYQIVPP-KNSHEKLYISKEVESVRPVIVAGILRDITFTQESYDSFIDLQEKLHANICKKRSLVSIGTHDLDTLSGPFYYKALAPKDIKFVPLSQTKEYNAEELFKFYDESSS--HLKKFLPIIKDSPVYPVIYDSKNVVCSL 236          
BLAST of DY257160 vs. ExPASy Swiss-Prot
Match: SYFB_MOUSE (Phenylalanyl-tRNA synthetase beta chain OS=Mus musculus GN=Farsb PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.490e-14
Identity = 57/176 (32.39%), Postives = 89/176 (50.57%), Query Frame = 2
Query:  239 LISYEEPAKRYDMLCLAGIARPLRVLKKRMAIPKLALTDVLTDSMLQLFAKPETSSTREYVF*AVLIDISFEEGRYNSFIDLQDKLLHNICPETNPCGN*DS*LELVTRPFHV*GFAAITNKF--LCHRSRHGTSQPMSLWSFTNQI*N*KNICTYLKNSPLYPVLKEPNRTVLSL 760
            L   + PA RYD+LCL G+AR L+V K+R+  P         D + +L    ET+  R +   AVL +I F + RY+SFI+LQ+KL  NIC +          L+ ++ PF          KF  L     +   + M+++   N +   K+    +++ PLYPV+ + N  VLS+
Sbjct:   62 LYKIDVPANRYDLLCLEGLARGLQVFKERIKAPVYKRVMPKGD-IQKLVITEETAKVRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHL---KHYLHIIESKPLYPVIYDSNGVVLSM 233          
BLAST of DY257160 vs. ExPASy Swiss-Prot
Match: SYFB_CANAL (Phenylalanyl-tRNA synthetase beta chain OS=Candida albicans GN=FRS1 PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.597e-13
Identity = 56/175 (32.00%), Postives = 85/175 (48.57%), Query Frame = 2
Query:  242 ISYEEPAKRYDMLCLAGIARPLRVLKKRMAIPKLALTDVLTDSMLQLFAKPETSSTREYVF*AVLIDISFEEGRYNSFIDLQDKLLHNICPETNPCGN*DS*LELVTRPFHV*GFAAITNKFLCHRSRHGTSQ--PMSLWSFTNQI*N*KNICTYLKNSPLYPVLKEPNRTVLSL 760
            +  E PA RYDMLC+ GIA+ L       + P   L+    +  + L  K  T   R+Y   A+L +++ +E  Y+SFI LQDKL  N+C            L+ +T PF    + A+  K +  +  + T +     L  F  +  N       +K+SP+YPV+ + NRTV SL
Sbjct:   52 LKIEVPANRYDMLCIEGIAQALNEFLGNTSAPNYKLSPSKPE--ISLTIKESTYPIRQYAASAILRNVNLDERAYDSFIALQDKLHANLCRNRTLVAIGTHDLDTLTPPF---TYEALAPKDIVFKPLNQTKEINGEELMEFYEKDKNIGKFLHIIKDSPVYPVMLDANRTVASL 221          
BLAST of DY257160 vs. ExPASy Swiss-Prot
Match: SYFB_SCHPO (Phenylalanyl-tRNA synthetase beta chain OS=Schizosaccharomyces pombe GN=SPAC23A1.12c PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.307e-12
Identity = 58/171 (33.92%), Postives = 75/171 (43.86%), Query Frame = 2
Query:  257 PAKRYDMLCLAGIARPLRVLKKRMAIPKLALTDVLTDSMLQLFAKPETSSTREYVF*AVLIDISFEEGRYNSFIDLQDKLLHNICPETNPCGN*DS*LELVTRPFHV*GFAAITNKFLCHRSRHGTSQPMSLWSFTNQI*N*KNICTYL---KNSPLYPVLKEPNRTVLSL 760
            PA RYDMLCL GIA+ L V  +RMA P+      L  S   L   PETS  R Y   A+L  +  +  RY SFI LQDKL  N+C              ++  PF           F+        +    L  + +     K++  YL    NSP YPV+ +  R V SL
Sbjct:   58 PANRYDMLCLEGIAQALNVFNRRMATPQYK----LLPSTTSLTISPETSEIRPYAAAAILRGVKLDPIRYQSFIALQDKLHANLCRNRTLVAIGTHDFSVMEGPFTYEALKPEEINFVPLNQTQEINGSNLLEFYKDS----KHLSRYLHIIANSPRYPVILDAKRRVCSL 220          
BLAST of DY257160 vs. ExPASy Swiss-Prot
Match: SYFB_YEAST (Phenylalanyl-tRNA synthetase beta chain OS=Saccharomyces cerevisiae GN=FRS1 PE=1 SV=3)

HSP 1 Score: 45.4394 bits (106), Expect = 3.386e-11
Identity = 33/106 (31.13%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  607 FVPPKQTRDFTANELMEFYK-PDLK--LKKYLHLFEEFSSVPCFKRTE*DCSVLIQQLIMGAISALTLKTKNGVH*LIRPRFDQTP-RLVINPLLTIFPEYCHRKY 912
            FVP  QT++FT ++L+EFYK P+ K  + +Y+H+ E+    P    ++ D    +  LI    S +++ T+N +  +     D+T   +V+N L T+F  YC   +
Sbjct:  169 FVPLNQTQEFTGDKLIEFYKSPEQKNNIGRYVHIIEDSPVFPVIMDSK-DRVCSLPPLINSEHSKISVNTRNILIDITAT--DKTKAEIVLNILTTMFSRYCDEPF 271          

HSP 2 Score: 44.669 bits (104), Expect = 3.386e-11
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 3
Query:  513 RRRTLVAIETHDLNS*QGPFTYEALPPSQINF 608
            R R+LVA+ THDL+S +GPF Y ALPP  I F
Sbjct:  138 RNRSLVAMGTHDLDSIEGPFHYRALPPKDIKF 169          
The following BLAST results are available for this feature:
BLAST of DY257160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SYFB_ARATH7.154e-2237.44Probable phenylalanyl-tRNA synthetase beta chain O... [more]
SYFB_CAEEL3.110e-1734.12Phenylalanyl-tRNA synthetase beta chain OS=Caenorh... [more]
SYFB_DROME1.182e-1633.99Probable phenylalanyl-tRNA synthetase beta chain O... [more]
SYFB_PONAB3.802e-1533.33Phenylalanyl-tRNA synthetase beta chain OS=Pongo a... [more]
SYFB_HUMAN3.802e-1533.33Phenylalanyl-tRNA synthetase beta chain OS=Homo sa... [more]
SYFB_DICDI3.219e-1430.37Phenylalanyl-tRNA synthetase beta chain OS=Dictyos... [more]
SYFB_MOUSE5.490e-1432.39Phenylalanyl-tRNA synthetase beta chain OS=Mus mus... [more]
SYFB_CANAL1.597e-1332.00Phenylalanyl-tRNA synthetase beta chain OS=Candida... [more]
SYFB_SCHPO2.307e-1233.92Phenylalanyl-tRNA synthetase beta chain OS=Schizos... [more]
SYFB_YEAST3.386e-1131.13Phenylalanyl-tRNA synthetase beta chain OS=Sacchar... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK1BB06FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257160 ID=DY257160; Name=DY257160; organism=Citrus sinensis; type=EST; length=1310bp
GGTGACGACTAATGAAGAAAGCATTGAAAAGAAGAGTTCTTCCAGCTTTT
TTCACTTGTATGAAGTATTGTTTTGTTTCATTTTATTTTGGTAGCTTAGT
ACAAAAATTTATATGAAGTATTGTTTTGTTTTATTTTATTTTGGTAGCTT
AATACAAAAATTTATCTATGTTTGTTATTGCGTTGGGTACTGCGAATTTG
GAGTGAATGATTTTTGCTGAGCAATTAGAAGACAATAATTAATTTCTTAT
GAAGAACCAGCCAAAAGATATGATATGCTTTGCCTAGCAGGAATTGCTCG
CCCTCTTCGGGTTTTGAAGAAGCGGATGGCAATTCCTAAGTTGGCACTCA
CAGATGTCCTTACAGACTCCATGCTTCAGTTGTTTGCGAAGCCTGAGACA
TCCTCCACTCGTGAATATGTCTTTTGAGCTGTTTTAATAGACATCAGTTT
TGAAGAAGGTAGATATAACAGCTTCATTGATCTTCAAGATAAGCTTCTTC
ATAACATTTGCCCGGAGACGAACCCTTGTGGCAATTGAGACTCATGACTT
GAACTCGTGACAAGGCCCTTTCACGTATGAGGCTTTGCCGCCATCACAAA
TAAATTTTTGTGCCACCGAAGCAGACACGGGACTTCACAGCCAATGAGCT
TATGGAGTTTTACAAACCAGATTTGAAACTGAAAAAATATTTGCACTTAT
TTGAAGAATTCTCCTCTGTACCCTGTTTTAAAAGAACCGAATAGGACTGT
TCTGTCCTTATCCAACAATTAATAATGGGGGCCATTTCTGCCCTCACCCT
AAAAACTAAAAACGGGGTTCATTGATTGATCCGCCCCCGATTTGACCAAA
CGCCCAGATTGGTTATAAACCCATTGCTAACCATTTTTCCTGAGTATTGC
CACAGAAAATACCAAATGGTAACCCATTGAACCGAGTCTCTGCCATGGCG
GAGAGGCCATATTTCTTTCCCCTGACCGCTCCCCCTACCCAAAGTGAAGT
TTTCTTTTGGCATACTAACAAACTAACATTTTGCGTCCTCTCTTTGGGGG
GGAAATAGGTTTTATCCGTTTATTTGAACCAGAATGGAATACGTGCTGGT
CAATATCGAATATAACACAGATCTGAATTGTCACTGTGGATATTACAGGG
TCTCTTTTTCCCCCTCTCCCACTTGCATAAATGCCCTCTCTACTCGCCAC
CTACGCTGCGGCCCCTAGCTCCCGACAGCCGACACCTCCCCACTCCTTCG
CCTATTCTTGCCCTTCCAAACAACATCACTCCCTACTCGACTGAGAGTAC
ACAAAACCAC
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