FC871249

Overview
NameFC871249
Unique NameFC871249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13657 contig Csv1_Contig13657:767..1401. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8F_ARATH (Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.910e-18
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 2
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIP 151
            SAEKAIFIFVDNVLPP GA+MS++YEEKKD+DGFLYVTYSGENTFG   P
Sbjct:   72 SAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFGFGSP 121          
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8E_ARATH (Autophagy-related protein 8e OS=Arabidopsis thaliana GN=ATG8E PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.719e-18
Identity = 40/47 (85.11%), Postives = 46/47 (97.87%), Query Frame = 2
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 142
            SAEKAIFIFVDNVLPPTG +MS++YE+KKDEDGFLY+TYSGENTFG+
Sbjct:   73 SAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYITYSGENTFGA 119          
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8G_ARATH (Autophagy-related protein 8g OS=Arabidopsis thaliana GN=ATG8G PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.008e-17
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 2
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 142
            SAEKAIFIFVDNVLPPTGA+MS IY+E K+EDGFLYVTYSGENTFGS
Sbjct:   72 SAEKAIFIFVDNVLPPTGAMMSTIYDENKEEDGFLYVTYSGENTFGS 118          
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8_PHANO (Autophagy-related protein 8 OS=Phaeosphaeria nodorum GN=ATG8 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.483e-16
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 2
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHI 148
            S EKAIFIFVD VLPPT A+MS+IYEE KDEDGFLY+TYSGENTFG  I
Sbjct:   71 SPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFGEAI 119          
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSJ (Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.483e-16
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            SAEKAIFIFV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct:   72 SAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSI (Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.483e-16
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            SAEKAIFIFV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct:   72 SAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8_YARLI (Autophagy-related protein 8 OS=Yarrowia lipolytica GN=ATG8 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.243e-16
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 2
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            S+E+AIFIFVD+VLPPT A+MS+IYEE KDEDGFLYVTYSGENTFG
Sbjct:   71 SSERAIFIFVDDVLPPTAALMSSIYEEHKDEDGFLYVTYSGENTFG 116          
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8_CHAGB (Autophagy-related protein 8 OS=Chaetomium globosum GN=ATG8 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.243e-16
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 2
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 142
            S EKAIFIFVD VLPPT A+MS+IYEE KDEDGFLY+TYSGENTFG+
Sbjct:   71 SPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFGN 117          
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8_PODAN (Autophagy-related protein 8 OS=Podospora anserina GN=ATG8 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.235e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            S EKAIFIFVD VLPPT A+MS+IYEE KDEDGFLY+TYSGENTFG
Sbjct:   71 SPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116          
BLAST of FC871249 vs. ExPASy Swiss-Prot
Match: ATG8_PENCW (Autophagy-related protein 8 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=atg8 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.235e-16
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    2 SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 139
            S EKAIFIFVD VLPPT A+MS+IYEE KDEDGFLY+TYSGENTFG
Sbjct:   71 SPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116          
The following BLAST results are available for this feature:
BLAST of FC871249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
ATG8F_ARATH5.910e-1884.00Autophagy-related protein 8f OS=Arabidopsis thalia... [more]
ATG8E_ARATH7.719e-1885.11Autophagy-related protein 8e OS=Arabidopsis thalia... [more]
ATG8G_ARATH1.008e-1789.36Autophagy-related protein 8g OS=Arabidopsis thalia... [more]
ATG8_PHANO2.483e-1681.63Autophagy-related protein 8 OS=Phaeosphaeria nodor... [more]
ATG8C_ORYSJ2.483e-1686.96Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8C_ORYSI2.483e-1686.96Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8_YARLI3.243e-1684.78Autophagy-related protein 8 OS=Yarrowia lipolytica... [more]
ATG8_CHAGB3.243e-1682.98Autophagy-related protein 8 OS=Chaetomium globosum... [more]
ATG8_PODAN4.235e-1684.78Autophagy-related protein 8 OS=Podospora anserina ... [more]
ATG8_PENCW4.235e-1684.78Autophagy-related protein 8 OS=Penicillium chrysog... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DF06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871249 ID=FC871249; Name=FC871249; organism=Citrus sinensis; type=EST; length=635bp
GAGTGCTGAAAAGGCGATATTTATTTTTGTGGATAATGTGCTCCCACCTA
CAGGTGCAATTATGTCTGCCATATACGAAGAGAAAAAGGATGAAGATGGT
TTTCTTTATGTGACTTACAGTGGGGAGAACACATTTGGAAGCCACATCCC
AGTTTAGCCTTGTGATTATCTATCTGCTCATTGTGTGGTTTCTTGTGCGA
CCACATTTTTATCTCAATTATCATCCTTGCTTTCCGCTGAATATTCCTTT
ATCGGGCATATTTTATATTTTATAAAGACATTGCCAGTGATAATATGTAC
AGTTACCTATTGTATATAAGTCTTAAAGGCATAATATGTCAAATTTCTTT
CTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAACCCCCCCTTTTTTTTTTAAAAATTGGTTTTTAAAAAAAAATTTTT
TTTTTTTTTTTTTTGGCCCAAAGGGGGCCCTCCCCCAAAAAAAAAAAATT
TTTTTTCCCCCCCCCCAAAAACCCCCCAAGGGGGGGTTATATAAGGGGGC
AATTTTTTTTTCCGGCCCTCCCGGGCCCGGTCCCA
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